PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008242029.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 479aa    MW: 52164.6 Da    PI: 8.9662
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008242029.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.46.2e-33199255360
                     -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh+k
  XP_008242029.1 199 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSL-DGQIAEIVYKGEHNHSK 255
                     9***************************************.***************85 PP
2WRKY104.46.1e-33399455359
                     -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     Dg++WrKYGqK+vkg+++prsYYrCts++C+v+k+ver ++dpk++++tYeg+Hnh+
  XP_008242029.1 399 DGFRWRKYGQKVVKGNPYPRSYYRCTSPKCSVRKHVERVSDDPKAFITTYEGKHNHD 455
                     9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-30186256IPR003657WRKY domain
SuperFamilySSF1182904.18E-26194256IPR003657WRKY domain
SMARTSM007743.8E-37197255IPR003657WRKY domain
PROSITE profilePS5081123.686199256IPR003657WRKY domain
PfamPF031061.5E-25199253IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.9E-35384457IPR003657WRKY domain
SuperFamilySSF1182906.93E-29391457IPR003657WRKY domain
PROSITE profilePS5081134.98392457IPR003657WRKY domain
SMARTSM007742.1E-37397456IPR003657WRKY domain
PfamPF031064.4E-26399455IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MDIKEAERVV IAKPVASRPT CSSFRSFTEL LAGAIDASPS NISSETAVPA IRPKTVRFKP  60
TVNHAVSGLV SSQAEMSGTA HSNSSEKISK SDSRASVVYK PLAKVVSRAT VSVLANMVSS  120
KGNFNTSHQS TQSSVEAGIL HQNQDKCFRS QLSPNLRHNN PSCAETNQTI EPLKIASQNV  180
EEDPKHIPST ANTDRPSYDG YNWRKYGQKQ VKGSEYPRSY YKCTHPNCPV KKKVERSLDG  240
QIAEIVYKGE HNHSKPQPPK KSSSGTQGLG LASDGTGQDT NNRLWNSQLN ERNEGSEGRV  300
EDQNEVGLPA HSYQSKAPLL YDPLASGGIN AGGGTPDNSC GLSGECEEGS KGPEAEDYEP  360
RSKRRKSENQ SNEGGISGEG VPDPRVVVQS SVDSDMTGDG FRWRKYGQKV VKGNPYPRSY  420
YRCTSPKCSV RKHVERVSDD PKAFITTYEG KHNHDMPLRN TNPGASEKDA QAPTTKEKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-33199457877Probable WRKY transcription factor 4
2lex_A2e-33199457877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008242029.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008242029.10.0PREDICTED: WRKY transcription factor 44 isoform X1
RefseqXP_008242036.10.0PREDICTED: WRKY transcription factor 44 isoform X1
TrEMBLM5VZ010.0M5VZ01_PRUPE; Uncharacterized protein
STRINGXP_008242029.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67903450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.11e-112WRKY family protein