PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008241906.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WOX
Protein Properties Length: 304aa    MW: 33750.8 Da    PI: 6.6329
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008241906.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.66e-203192257
                    T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    ++R+t+t++q+++L++l+++   r psae++++++++l    +++ ++V++WFqN++a+e++
  XP_008241906.1 31 STRWTPTSDQIRILKDLYYNngVRSPSAEQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 92
                    58*****************8678*************************************97 PP
2Wus_type_Homeobox113.51.1e-363094265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++tRWtPt++Qi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
     XP_008241906.1 30 SSTRWTPTSDQIRILKDLYYnNGVRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 94
                       789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.71E-112596IPR009057Homeodomain-like
PROSITE profilePS5007110.562793IPR001356Homeobox domain
SMARTSM003895.1E-62997IPR001356Homeobox domain
CDDcd000861.30E-73294No hitNo description
Gene3DG3DSA:1.10.10.601.5E-73292IPR009057Homeodomain-like
PfamPF000461.6E-173292IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEPQQTQQQP NEDGSNKGTS SGTNFLCRQS STRWTPTSDQ IRILKDLYYN NGVRSPSAEQ  60
IQRISARLRQ YGKIEGKNVF YWFQNHKARE RQKKRFIDVP APPIMQRSGL GINNNNAPTA  120
YEPINHSNKY PNSSASAGVS ASSAGVIAVG QMGSYGYGSM TMEKSFRDCS ISAAGGTSSG  180
HVGGSNNNIG HNFGSWVGVD PYSSPYTLFD KRSSSRQVFG DQENTMDEED LEYQENLQAS  240
PEIETLPLFP MHGEDIHGFG NIKSTSDGYY SGWYRSDDGN NGRTSLELSL NSYGHMTPDY  300
FRSY
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008241906.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT9988069e-65KT998806.1 Pyrus betulifolia wox transport 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241906.10.0PREDICTED: protein WUSCHEL
SwissprotQ8LL112e-88WUS_PETHY; Protein WUSCHEL
TrEMBLM5VSN50.0M5VSN5_PRUPE; Uncharacterized protein
STRINGXP_008241906.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82413345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-48WOX family protein
Publications ? help Back to Top
  1. Stuurman J,Jäggi F,Kuhlemeier C
    Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells.
    Genes Dev., 2002. 16(17): p. 2213-8
    [PMID:12208843]