PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008241815.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 815aa    MW: 88613.8 Da    PI: 4.6321
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008241815.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.81.4e-09765813247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      +rW+  E++ l  +v+++G g+Wk I +      + Rt+ ++k++w++ 
   XP_008241815.1 765 KRWSLLEEDTLRTGVQKYGAGNWKFILNSYReifEERTEVDLKDKWRNM 813
                      69*********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.494759815IPR017930Myb domain
SuperFamilySSF466891.55E-13761814IPR009057Homeodomain-like
SMARTSM007170.002763815IPR001005SANT/Myb domain
CDDcd116605.82E-19765815No hitNo description
Gene3DG3DSA:1.10.10.608.9E-11765815IPR009057Homeodomain-like
PfamPF002496.0E-8765813IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 815 aa     Download sequence    Send to blast
MDSDVDVSRW VLELLIRDRE KECIAKRVLA VAPFSDQDYR LKKTVLLRTI ECDVYDALVT  60
ETMLETLEMI EDLDISQGIA TTDSMKAAYL AVATECTVKF LVGLMGKPSG KYLEAVDRIW  120
RGRVGALERS ETSQLISAEL RQRMDEVEAG VWDLRVSKKL SRMNTRNDAL RLVAVYVKEA  180
LALMGPPFIT WAVRLNVPKE VADLEGDQIA VAKEANVGGG PEAEAQTKNG ANVGDRSELE  240
AQTENGANAG DGSELEAQMA NAADVGGESE LEAQMETGAN VGGESELEAQ MENGGNVQMA  300
SGTNAVDGSE LEKEVVNETN AGDGSQLEVQ TTNGTNAAGE SVLEAQLVNG TNLGDGCELQ  360
AQRVNEANGS CGFESGPQPM TGVQLREVGA RRMPPTMSRD LVLNERDSGF TNREVLRFGD  420
DQVHEIGVGL PSTNRELVLS LDPTTKDKEI QRSAGLRYKH LAHRRTRGPV RIRDAEDLGT  480
DLSNSKYDSL STPEVSNAQE ALRSSILELQ AVVTDPLPDA LRVAETIRLD LAMKSVNAGA  540
ENLSVEKGAG PVQSHNDNLG NMSVPQSSGK EKDVPTPPVN QGKGTESVQA DDANVGNPSS  600
SNKNNAPRPM TDPLLDALQV AETIRLDLAM KSVNVGAENL SVEIGAGPVQ SHNDNLGKVS  660
FPQSSGKEKD VPNPPVNQGK GTESVQTDDV NLGNPSSSNK NNAPRPSLME RNITAHTYEW  720
DDSIDTSQGA MKDPGRLHLP SPKRNAVSPL KKYENKRFTK RRKAKRWSLL EEDTLRTGVQ  780
KYGAGNWKFI LNSYREIFEE RTEVDLKDKW RNMTR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008241815.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241815.10.0PREDICTED: uncharacterized protein LOC103340169
TrEMBLA0A251NLT40.0A0A251NLT4_PRUPE; Uncharacterized protein
STRINGXP_008241815.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06910.12e-18TRF-like 7