PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008241668.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 601aa    MW: 65884.9 Da    PI: 5.0785
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008241668.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS367.91.4e-1122316012374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      ++Ll+cA+ ++++d  +a + L rl+e +s +gdp++R+ +yfteAL++r+++   +  k+l++++t ++  ++ + ++k++++++P+ kf+hl
  XP_008241668.1 231 LKALLDCAR-LAESDPDRAVKSLIRLRESVSDRGDPTERVGFYFTEALQSRVSS--LQSEKSLAATTTYDTACEDFTLSYKALNDACPYSKFAHL 322
                     689******.566699999***********************************..6666778888888888*********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     taNqaIlea+e+++++Hi+Df+i qG+QW+aLlqaLa+R+ g+p ++Ri g+ +p+ g   + +l +tg+rL++fA+ l+++fef++ + + +++
  XP_008241668.1 323 TANQAILEAMERATKIHIVDFGIVQGVQWAALLQALATRSTGKPsRIRISGIPAPSLGtsPAASLFATGNRLRDFAKLLELNFEFEP-ILTPVHE 416
                     ****************************************666659*********99999999************************.799**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     l+ + +rv+++EalaVnl+lql++llde+ +  +   + Lkl ksl+Pk+v++ e ea++++  F  rf +al+yy+alf+sle ++ r+s er 
  XP_008241668.1 417 LDESCFRVEQDEALAVNLMLQLYNLLDETPTAVQ---SALKLAKSLNPKIVTLGEYEANLSRVGFTSRFKNALKYYTALFESLEPNMTRDSPERL 508
                     **************************99999998...9********************************************************* PP

            GRAS 284 kvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                     kvE+ llgr+i  vv  e+   +rer e +e+W+  +e++GF+pv+ls++a++qak ll ++++  y++ e+   ++ l W++ pL++vS+Wr
  XP_008241668.1 509 KVEKLLLGRRIGGVVGPEQPGtKRERFEDKEQWKYLMESSGFEPVALSHYAVSQAKILLWNYNNSLYSLIESPPGFLsLAWNEVPLFTVSSWR 601
                     *****************998769****************************************999999888666666**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.852204580IPR005202Transcription factor GRAS
PfamPF035144.9E-110231601IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIK QKQQQEQQQQ QHHHHQQQPL GAFSLTPWPN NTHSPNLGYG  60
LTGSGYTDPF QLSGSSDAGG EPGFPFPNLD HHPTGFRYSD LGGGGAAEFD SDEWMDSIIG  120
GGDSTDSSNL PSACDTWHGS NADFGLYGAD PFQPPCPSRL SNPCSPPSDL NRVIFSETQN  180
QLPAWTAPPP PPPAPHVVVK QAKSADPPPQ PNDAVGVSSR SPEIESAPPL LKALLDCARL  240
AESDPDRAVK SLIRLRESVS DRGDPTERVG FYFTEALQSR VSSLQSEKSL AATTTYDTAC  300
EDFTLSYKAL NDACPYSKFA HLTANQAILE AMERATKIHI VDFGIVQGVQ WAALLQALAT  360
RSTGKPSRIR ISGIPAPSLG TSPAASLFAT GNRLRDFAKL LELNFEFEPI LTPVHELDES  420
CFRVEQDEAL AVNLMLQLYN LLDETPTAVQ SALKLAKSLN PKIVTLGEYE ANLSRVGFTS  480
RFKNALKYYT ALFESLEPNM TRDSPERLKV EKLLLGRRIG GVVGPEQPGT KRERFEDKEQ  540
WKYLMESSGF EPVALSHYAV SQAKILLWNY NNSLYSLIES PPGFLSLAWN EVPLFTVSSW  600
R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1512296013375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008241668.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241668.10.0PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLM5VW270.0M5VW27_PRUPE; Uncharacterized protein
STRINGXP_008241668.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62803449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein