PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008241450.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB | ||||||||
Protein Properties | Length: 250aa MW: 29472.7 Da PI: 6.1037 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.9 | 6.2e-15 | 28 | 75 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEde+l +vk+ G+++W++ a++ g++R++ +c+ rw++yl XP_008241450.2 28 KGPWIEEEDERLTSYVKLKGNRRWDALAKESGLRRSGRSCRMRWLNYL 75 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.2 | 6.6e-17 | 85 | 126 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T eE+++++++++++G++ W++Iar+++ gRt++++k++w++yl XP_008241450.2 85 TVEEEKIILHLHERWGNK-WSKIARMLP-GRTDNEIKNYWRTYL 126 89****************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.478 | 23 | 75 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.3E-26 | 26 | 122 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.6E-11 | 27 | 77 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.1E-13 | 28 | 75 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-19 | 29 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.13E-7 | 30 | 75 | No hit | No description |
PROSITE profile | PS51294 | 24.993 | 76 | 130 | IPR017930 | Myb domain |
SMART | SM00717 | 3.2E-15 | 80 | 128 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-22 | 83 | 129 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.8E-15 | 85 | 126 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.99E-11 | 85 | 126 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MNLCKPMVEF PQTSDVSTXY MEGEKLRKGP WIEEEDERLT SYVKLKGNRR WDALAKESGL 60 RRSGRSCRMR WLNYLRPNLK HEHITVEEEK IILHLHERWG NKWSKIARML PGRTDNEIKN 120 YWRTYLKKKE PIQNGNFQCT SDKGQHSLFF QEVDMSAEKQ YNFNQHHDSV SNLCGAKDTC 180 SDDLGLSEFA LTNSPYETRL SDWISELLSE QSGINYNQDC NTGESDLCHL TWTPDDSNRW 240 ECPSFLWDMN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-26 | 26 | 129 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00406 | DAP | Transfer from AT3G53200 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008241450.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008241450.2 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: myb-related protein MYBAS1 | ||||
Swissprot | Q9SCP1 | 2e-60 | MYB27_ARATH; Transcription factor MYB27 | ||||
TrEMBL | A0A314Y478 | 1e-156 | A0A314Y478_PRUYE; Transcription factor MYB27 | ||||
STRING | XP_008241450.1 | 1e-172 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13169 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53200.1 | 8e-63 | myb domain protein 27 |
Publications ? help Back to Top | |||
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