PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008241188.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 335aa    MW: 37995.6 Da    PI: 6.6655
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008241188.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.5e-12198223126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     y   +C+++ +tG+C yGd+CkF+H+
  XP_008241188.2 198 YQPDICKDYKETGYCGYGDSCKFMHD 223
                     67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.44E-9194228IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7197224IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878197225IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-10198223IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-13198228IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.0E-13257316IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578508.7E-13274318No hitNo description
PfamPF139203.9E-8274315No hitNo description
SMARTSM001848.5E-5275312IPR001841Zinc finger, RING-type
CDDcd001622.30E-7275316No hitNo description
PROSITE profilePS5008910.542275313IPR001841Zinc finger, RING-type
PROSITE patternPS005180290299IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MFWLKSCSSL AVIVIMLIKD SDGNAEPGAV CNFFWKPLKK QNIRKRRVDE DEEEDSSKSG  60
GTSLPSQRKA SKLDGKLYFS SGLSKSSTPD SSAIFEFKSS KEIQVEHDSK ATATLEIETE  120
FSRDARAVRE RVLKLAEEAL KGKSKGIGDE KLYKGIHGYT DYKAGFRREL TVASEKAGGS  180
HGPLRASAHI RVTTRFDYQP DICKDYKETG YCGYGDSCKF MHDRGDYKSG WQMEREWDEA  240
EKIRKRNLAL GEDDVDQTEE DDDDDDEDGS LPFACFICRQ PFVDPVVTKC NHYFCEHCAL  300
KHHSKNKKCF VCDKPTLGIF NTAHEIRRRM AAEDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M4e-6798326104313RING finger protein 113A
5z58_M4e-6798326104313RING finger protein 113A
6ff4_t4e-6798326104313RING finger protein 113A
6ff7_t4e-6798326104313RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008241188.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241188.20.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX841e-159C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A251NX620.0A0A251NX62_PRUPE; Uncharacterized protein
STRINGXP_008241188.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-157C3H family protein