PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008240943.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 687aa    MW: 76391.4 Da    PI: 8.5415
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008240943.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.21.2e-101768348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                     +W t+E++ll++av+++G+ +W+++a ++         +t+  ck ++++++
   XP_008240943.1 17 SWGTWEELLLACAVHRFGTQSWDAVATELRkrssnlHLLTPHACKRKFHDLR 68
                     7*****************************9999997799999999999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007179.7E-41470IPR001005SANT/Myb domain
PfamPF002492.9E-101667IPR001005SANT/Myb domain
CDDcd001677.58E-51767No hitNo description
Gene3DG3DSA:1.20.920.104.1E-15302439IPR001487Bromodomain
SMARTSM002972.0E-13316426IPR001487Bromodomain
SuperFamilySSF473701.7E-16318421IPR001487Bromodomain
CDDcd043694.33E-15327421No hitNo description
PfamPF004399.3E-10334411IPR001487Bromodomain
PROSITE profilePS5001411.892335407IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MIFLMDKPNF PEKQTPSWGT WEELLLACAV HRFGTQSWDA VATELRKRSS NLHLLTPHAC  60
KRKFHDLRRR FSQNDSASGK DDDTPPTPWL DQLRQRRLDE LRRELQRYDH SIVSLQLKVE  120
RLKEVREQSL RETEKPVEKS DLEKTGEEEI EHKDAEPEDN SPEKKGISGE VSEHDDRSCN  180
ESNTTDPKHE IPETEVADAD KGSGQTEPAG EETEPVEKLD NPVVEDSCNG SSDSVVKETA  240
VVEAEKGNSG ELKESVAESK GREEEEGTRE SPSNSEVQSS ASLSRKLGQE PKPGGPGGPD  300
RPEEPSEPDQ EDESPAMKGV PVESQPLAEF LGILRSHKFA SFFERRLHSQ ETPIYKNMIR  360
QHVDFELVQT RLEGGRYEPC SRFLFFRDLL LICNNAIVFF GKKSPEYKAA CELQLLVSKE  420
MVLQAPKQDP PPKEETPKPP APPLNQDPET SDSLLAKSKL SLPLNACRKR SSITARASTT  480
SSSGPDRKKE QITTSFRDVK PAISWKQKEE SSDEVEKLHV TKKRRKERLR SSSRNNSSKN  540
GRSRGNTNSD RNSEANDGFS SRVVTSNENS ESKAETEKKS NTNSSGKKRS AADFLSRMKR  600
SSTSKTGLSA ETSKTPDNNS KGGRAEQRKN GNGKGSAQKD QGSRRGSGGR QAAKEQGSPT  660
KRSVGRPSKR AAAPATAGPA KRTRQRG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1521525KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008240943.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240943.10.0PREDICTED: uncharacterized protein LOC103339426
TrEMBLA0A251N8620.0A0A251N862_PRUPE; Uncharacterized protein
STRINGXP_008240943.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.16e-64DNA-binding bromodomain-containing protein