PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008240870.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 703aa    MW: 76743.1 Da    PI: 6.5935
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008240870.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07279299526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++f++ G C++Gd C +aHg
  XP_008240870.1 279 PCPDFRK-GACRRGDMCEYAHG 299
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.205.5E-1810152IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484038.55E-1816151IPR020683Ankyrin repeat-containing domain
PfamPF127966.5E-1054126IPR020683Ankyrin repeat-containing domain
CDDcd002042.75E-1557133No hitNo description
SMARTSM002480.00125888IPR002110Ankyrin repeat
PROSITE profilePS5029717.71458151IPR020683Ankyrin repeat-containing domain
SMARTSM002481.8E-493125IPR002110Ankyrin repeat
PROSITE profilePS5008811.64893128IPR002110Ankyrin repeat
SMARTSM003564.0E-6274300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582279301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4279301IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-5279299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4307337IPR000571Zinc finger, CCCH-type
SMARTSM0035665309332IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MNNHLTVETE DTFASLLELA ANNDIESFKR SIERDPSAID EIGLWYCRQK GSKQMVNEQR  60
TPLMVAAIYG SIDVIKLILS LSDADVNLAC GLDRSTALHC AASGGADNAV DVVRLLLAAG  120
ADPNLIDANG HRPVEVIVVP PRLQNVRLAL EELLMINGSA GEQILTVSTR TLHSSSPPLS  180
ASPENGSPSA LDFACSPTKS KFYNLPVSSA SEKKEYPVDP SLPDIKNSIY STDEFRMYSF  240
KVRPCSRAYS HDWTECPFVH PGENARRRDP RKFHYSCVPC PDFRKGACRR GDMCEYAHGV  300
FECWLHPAQY RTRLCKDGTS CARRVCFFAH TAEELRPLYV STGSAVPSPR SSTSGASAMD  360
FAAAMSLLPG SPSSVNVMSP SPFTPPMSPS ANGMSHSSLA WPQPNVPALH LPGSNLQSSR  420
LRSSLCARDM PANDYDILPE FDMQQQQLLN EFSCLSQPSM SSNSLNRSGR LKTLTPSNLD  480
DLFSAESLSP RYSDQPLQSG VFSPTHKSAV LNQFQQQQSM LSPIHTNFSP KSVDHPLLQA  540
SYGVPSSGRM SPRNVEPISP MGSRVSMLAQ REKQQQFRSL SSRELGSNSA SNVGSPVNCW  600
SKWGSSNGKP DWAVTTDELG KLRRSSSFEL LHNGEEPDLS WVQSLVKESP TEIKEKLTPS  660
SGVTATGSSS EGSNANSQRE SVDHAVLGAW IDQMHLDLVA QQN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008240870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFM2535630.0FM253563.1 Prunus cerasifera BAC insert containing Ma gene, resistant Ma1 allele, clone 76H19.
GenBankFM2535640.0FM253564.1 Prunus cerasifera BAC insert containing Ma gene, ma1 susceptible allele, clone 40K9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240870.10.0PREDICTED: zinc finger CCCH domain-containing protein 30
RefseqXP_008240871.10.0PREDICTED: zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLM5WGB70.0M5WGB7_PRUPE; Uncharacterized protein
STRINGXP_008240870.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]