PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008240801.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 663aa    MW: 74091.9 Da    PI: 9.7326
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008240801.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.6e-07570619147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
   XP_008240801.1 570 RRPFSVPEVEALVQAVEKLGTGRWRDVKLRAFdgaKHRTYVDLKDKWKTL 619
                      567888899*****************99888889*************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.0E-5377449IPR029071Ubiquitin-related domain
PROSITE profilePS5129413.67565624IPR017930Myb domain
SMARTSM007178.2E-7569622IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-9570620IPR009057Homeodomain-like
SuperFamilySSF466897.46E-15571652IPR009057Homeodomain-like
CDDcd116601.88E-16571621No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MVLQRRLDYG FNGYQVPEVP RASRSARGRG PIKKKLEANQ IRAFEILASV AGKLLQESEH  60
PLPTNDSCGK DAHFIFDDTT KSKQEKGNLS KEDPCERGSC DEQTLLCVGR MQECQQSYTL  120
NGVSHSQENF SYEINRASKS FDHSESIYSN KVFSDSPLSG DSVEEKPRGV LKRKLETGPS  180
KDTSIKDERT QILGSSEDVM KVEGMPPELV SCGHDVKTSF SRDCKNHDPL LCDCANIKVD  240
SRDDDENCVR YAQPLSVVKE FEHPPDASDE KINNLAASRH WRVAPERRIG GYSRNDEKIR  300
QVYRHGRTCY THQRSQKIFP FKKRKFFNQM PLTTTPDRGF NCESIFNSPD KRVNSDNYCA  360
EIGPSSSTTG GRVPLKSSDC NVKLSIKSFK VPDLFIEIPA TATVGSLKRT VMEAVTSILG  420
DGLHVGILVR GKKVRDDNKT LLQTGISQDE KSRNLGFMLE PKRAKLTYSP RSKDPSLPSG  480
RSRELTRHSA SLVSQPGTSN VSPNPPVINF GGCVKRDLNA APSLPCTSTE KTPQASQALV  540
AVPPISMNAL AVVPFHRKSG HPEYVQRRIR RPFSVPEVEA LVQAVEKLGT GRWRDVKLRA  600
FDGAKHRTYV DLKDKWKTLV HTARISPQQR RGEPVPQELL DRVLAAHACW SQRRAKQQVK  660
AAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-515546601107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1315324QKIFPFKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008240801.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240801.10.0PREDICTED: telomere repeat-binding protein 5-like
RefseqXP_008240809.10.0PREDICTED: telomere repeat-binding protein 5-like
RefseqXP_016646754.10.0PREDICTED: telomere repeat-binding protein 5-like
TrEMBLM5WL300.0M5WL30_PRUPE; Uncharacterized protein
STRINGXP_008240801.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131882124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-109TRF-like 2