PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008240449.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

NAC

Protein Properties

Length: 384aa MW: 42968.5 Da PI: 8.4222

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008240449.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.2	1.8e-54	9	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+ +yL+kkv++++l++ ++i+evdiyk++Pw+Lp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++++ XP_008240449.1 9 LPPGFRFHPTDEELILHYLTKKVASTPLPV-SIIAEVDIYKFDPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVAS 102 79**************************.89***********988899************************************9 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk Lvfykgr pkg kt+W+mheyrl XP_008240449.1 103 lgGRQNVGVKKALVFYKGRPPKGIKTNWIMHEYRL 137 988999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-65	5	171	IPR003441	NAC domain
PROSITE profile	PS51005	62.555	9	171	IPR003441	NAC domain
Pfam	PF02365	1.5E-27	10	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MMKNPESSLP PGFRFHPTDE ELILHYLTKK VASTPLPVSI IAEVDIYKFD PWELPAKAAF 60 GEKEWYFFSP RDRKYPNGAR PNRAAASGYW KATGTDKTIV ASLGGRQNVG VKKALVFYKG 120 RPPKGIKTNW IMHEYRLPEN PNNYTTTSKT MKLKDLSMRL DDWVLCRIYK KSNVSSSAAV 180 PPIDHEEEVE EEEDFLHDVL LPSLKSPLPG LGHNMSTNNT DLMPQKSSSF SNLLDAMDYS 240 LLTSFLADGQ YSNPTGTGLQ STPNRFPCSG TTGLDQKPLF INDYSNISSS SSSSKSHLLQ 300 KLPQFNGLNL PAIPSTESRL KRHDHPIADD HGLLYPSKKY VNSNCSFNHA TIQSDNISQG 360 HLLNHSLLNH QQLVLSSPQF QFQG

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MMKNPESSLP PGFRFHPTDE ELILHYLTKK VASTPLPVSI IAEVDIYKFD PWELPAKAAF  60
GEKEWYFFSP RDRKYPNGAR PNRAAASGYW KATGTDKTIV ASLGGRQNVG VKKALVFYKG  120
RPPKGIKTNW IMHEYRLPEN PNNYTTTSKT MKLKDLSMRL DDWVLCRIYK KSNVSSSAAV  180
PPIDHEEEVE EEEDFLHDVL LPSLKSPLPG LGHNMSTNNT DLMPQKSSSF SNLLDAMDYS  240
LLTSFLADGQ YSNPTGTGLQ STPNRFPCSG TTGLDQKPLF INDYSNISSS SSSSKSHLLQ  300
KLPQFNGLNL PAIPSTESRL KRHDHPIADD HGLLYPSKKY VNSNCSFNHA TIQSDNISQG  360
HLLNHSLLNH QQLVLSSPQF QFQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-72	8	173	19	170	NAC domain-containing protein 19
3swm_B	2e-72	8	173	19	170	NAC domain-containing protein 19
3swm_C	2e-72	8	173	19	170	NAC domain-containing protein 19
3swm_D	2e-72	8	173	19	170	NAC domain-containing protein 19
3swp_A	2e-72	8	173	19	170	NAC domain-containing protein 19
3swp_B	2e-72	8	173	19	170	NAC domain-containing protein 19
3swp_C	2e-72	8	173	19	170	NAC domain-containing protein 19
3swp_D	2e-72	8	173	19	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000269\|PubMed:24363315}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00333	DAP	Transfer from AT3G04070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008240449.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269\|PubMed:24363315, ECO:0000269\|PubMed:24659488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR822710	0.0	KR822710.1 Prunus persica NAC transcription factor NAC3 (NAC3) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008240449.1	0.0	PREDICTED: NAC transcription factor 25
Swissprot	Q84TD6	3e-98	NAC47_ARATH; NAC transcription factor 47
TrEMBL	A0A0P0KKI1	0.0	A0A0P0KKI1_PRUPE; NAC transcription factor NAC3
STRING	XP_008240449.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6621	27	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	3e-94	NAC domain containing protein 47

Publications ? help Back to Top
Hofmann NR A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air. Plant Cell, 2013. 25(12): p. 4771 [PMID:24363314] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]