PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008239968.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TCP
Protein Properties Length: 415aa    MW: 44493.8 Da    PI: 7.7309
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008239968.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP120.12.6e-3788205289
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 
                     ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa p + ++ g ++++a+++  + s +ss+s+ s +       
  XP_008239968.1  88 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQADPPVTAARGPGTTPANFTsLNISLRSSGSSMSVPsqlrssy 182
                     789*************************************************************9999999987777777777666664444455 PP

             TCP  89 ......................k 89 
                                           +
  XP_008239968.1 183 yspnfsvhqnqrrslfqgiglsS 205
                     55555555555333333333321 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-3792241IPR005333Transcription factor, TCP
PROSITE profilePS5136925.69394148IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0010029Biological Processregulation of seed germination
GO:0010229Biological Processinflorescence development
GO:0031347Biological Processregulation of defense response
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MEGGDQDHQL HHHHHHHYQQ QQHHHRPNFP FQLLEKKELD QEAASCSNST SPYPSLAITT  60
VDPATAITTT TTTTSTLQAS AEPSKKPPPK RTSTKDRHTK VDGRGRRIRM PALCAARVFQ  120
LTRELGHKSD GETIEWLLQQ ADPPVTAARG PGTTPANFTS LNISLRSSGS SMSVPSQLRS  180
SYYSPNFSVH QNQRRSLFQG IGLSSSDSSS TLLNFQTNSM HASMLQAKQE LRDTVSLDLS  240
ETASGEGSMG GRKRRPPEQD LNQMGGGGGG GGGGYLLQSS TGAVPASHHH SQIPANFWMV  300
ANSNNQVMSG DPIWTFPASV NNSGLYRGTM PGGLHFMNFP APMTLLPSQQ QLGGSGGGGG  360
GNDGDNMSDG QLNMLAGLNP YRHMSSTGVS ESQQASGSHS HHGGDDRHDS TSHHS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00396DAPTransfer from AT3G47620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008239968.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239968.10.0PREDICTED: transcription factor TCP15-like
TrEMBLM5WM860.0M5WM86_PRUPE; Uncharacterized protein
STRINGXP_008239968.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21203280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47620.13e-43TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14