PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008239921.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

NAC

Protein Properties

Length: 360aa MW: 40165.2 Da PI: 7.5338

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008239921.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179	1.2e-55	17	143	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL+kkv ++++ ++i evd++k+ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ XP_008239921.1 17 LPPGFRFHPTDEELISHYLHKKVIYISFSC-KAIGEVDLNKSEPWDLPGKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYK- 109 79**************************.88***********99999*************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++lvg+kktLvfy+grapkgek++Wvmheyrle XP_008239921.1 110 GKSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLE 143 999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.62E-65	8	167	IPR003441	NAC domain
PROSITE profile	PS51005	59.765	17	167	IPR003441	NAC domain
Pfam	PF02365	4.0E-29	18	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MENVPAGMAE QDEQIDLPPG FRFHPTDEEL ISHYLHKKVI YISFSCKAIG EVDLNKSEPW 60 DLPGKAKMGE KEWYFFCVRD RKYPTGLRTN RATEAGYWKA TGKDKEIYKG KSLVGMKKTL 120 VFYRGRAPKG EKSNWVMHEY RLEGKFSVHN LPKTAKNEWV ICRVFEKNSG GKKTHISGFV 180 RYGAVGNEIG PSGLPPLMDS SPYSSKTKLA SESSYVPCFS NPDPTDVQRN QGIVDYVNNP 240 LFGVSSNSSD FFPRAPFSNS FYSGQSAPVA ANFPFPGSVL MQDQSILRAL LENNGSNMRQ 300 SFKTEGEMVS VSQETGLTSE MNTEISSVMS NLEMGRRPFG DQEAPAAAAG AVDLDNFWNY

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MENVPAGMAE QDEQIDLPPG FRFHPTDEEL ISHYLHKKVI YISFSCKAIG EVDLNKSEPW  60
DLPGKAKMGE KEWYFFCVRD RKYPTGLRTN RATEAGYWKA TGKDKEIYKG KSLVGMKKTL  120
VFYRGRAPKG EKSNWVMHEY RLEGKFSVHN LPKTAKNEWV ICRVFEKNSG GKKTHISGFV  180
RYGAVGNEIG PSGLPPLMDS SPYSSKTKLA SESSYVPCFS NPDPTDVQRN QGIVDYVNNP  240
LFGVSSNSSD FFPRAPFSNS FYSGQSAPVA ANFPFPGSVL MQDQSILRAL LENNGSNMRQ  300
SFKTEGEMVS VSQETGLTSE MNTEISSVMS NLEMGRRPFG DQEAPAAAAG AVDLDNFWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-56	7	173	5	171	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-56	7	173	5	171	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-56	7	173	5	171	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-56	7	173	5	171	NO APICAL MERISTEM PROTEIN
3swm_A	5e-56	7	173	8	174	NAC domain-containing protein 19
3swm_B	5e-56	7	173	8	174	NAC domain-containing protein 19
3swm_C	5e-56	7	173	8	174	NAC domain-containing protein 19
3swm_D	5e-56	7	173	8	174	NAC domain-containing protein 19
3swp_A	5e-56	7	173	8	174	NAC domain-containing protein 19
3swp_B	5e-56	7	173	8	174	NAC domain-containing protein 19
3swp_C	5e-56	7	173	8	174	NAC domain-containing protein 19
3swp_D	5e-56	7	173	8	174	NAC domain-containing protein 19
4dul_A	5e-56	7	173	5	171	NAC domain-containing protein 19
4dul_B	5e-56	7	173	5	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008239921.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008239921.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-159	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	M5W9R3	0.0	M5W9R3_PRUPE; Uncharacterized protein
STRING	XP_008239921.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-157	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]