PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008239846.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 329aa    MW: 36710.1 Da    PI: 4.3815
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008239846.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.6e-1994148357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     k++++t +q++ Le+ F +++++  e++  LAk lgL+ rqV +WFqNrRa++k+
  XP_008239846.1  94 KKRRLTVDQVQFLEKSFDMENKLEPERKILLAKDLGLQPRQVAIWFQNRRARWKN 148
                     56689************************************************95 PP
2HD-ZIP_I/II127.55.7e-4194183291
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     kkrrl+ +qv++LE+sF++e+kLeperK  la++Lglqprqva+WFqnrRAR+k+kqlEkdye+L+++y++lk++ e+L ke+e+L++e+
  XP_008239846.1  94 KKRRLTVDQVQFLEKSFDMENKLEPERKILLAKDLGLQPRQVAIWFQNRRARWKNKQLEKDYEVLQANYNSLKADCESLAKENEKLKAEV 183
                     9**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.27E-1980151IPR009057Homeodomain-like
PROSITE profilePS5007116.63389149IPR001356Homeobox domain
SMARTSM003897.0E-1991153IPR001356Homeobox domain
CDDcd000864.87E-1892150No hitNo description
PfamPF000462.2E-1694148IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-1996156IPR009057Homeodomain-like
PROSITE patternPS000270124147IPR017970Homeobox, conserved site
PfamPF021831.0E-16149190IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MAGGRVYSGG ASSSSLSVLL QNQRGPCASE PLDSLFLSGS SNSSSASPFL GSRSMVSFED  60
VRGGNGSNRS LFHQYEHEDN GDDDLDEYFH QPGKKRRLTV DQVQFLEKSF DMENKLEPER  120
KILLAKDLGL QPRQVAIWFQ NRRARWKNKQ LEKDYEVLQA NYNSLKADCE SLAKENEKLK  180
AEVLVLSEKL PHKEKESGTS ELSDTNKVSQ EPTQNPTADS LSECEVSKVS AVASKQEDLS  240
SGKSDIFDSD SPHYTDGVHS SILEPGDSSY VFEPDQSDLS QDEEDNLSKS LLPPYIFPKL  300
EDVDYSDTPA NSCNFGFPVE DQAFWSWSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141149RRARWKNKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008239846.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239846.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like
TrEMBLM5W9Z90.0M5W9Z9_PRUPE; Uncharacterized protein
STRINGXP_008239846.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-43homeobox 1