PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008239644.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 287aa    MW: 32285.6 Da    PI: 8.007
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008239644.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.2e-19100149255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr++k +g+W+AeIrdp    +r +r +lg+++tae Aa a+++a+++++g
  XP_008239644.1 100 HYRGVRQRK-WGKWAAEIRDP----IRaARLWLGTYDTAEAAALAYDKAALSFKG 149
                     69******9.**********7....358***********************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.61E-2299158No hitNo description
PROSITE profilePS5103224.329100157IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-21100158IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-31100158IPR001471AP2/ERF domain
SMARTSM003801.2E-36100163IPR001471AP2/ERF domain
PfamPF008474.5E-13100149IPR001471AP2/ERF domain
PRINTSPR003671.8E-10101112IPR001471AP2/ERF domain
PRINTSPR003671.8E-10123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MKEQYINSQF HKVDRKHGKR PLPADESEAK EEDQIFPVYS SRSQQDTSVM ISALAQVIGN  60
TDQTPLQQVQ GNPLITSQSS PAESQSQPAL QDQGNVRRQH YRGVRQRKWG KWAAEIRDPI  120
RAARLWLGTY DTAEAAALAY DKAALSFKGS KAKLNFPERV QESSEFGNLT ITTQQHHNLN  180
NPENVERVQV TDPVIPNPPH QAISQPTYSN VFNYAPYVQG ESNNVDYNVH QVLPSHENHG  240
PQILPATSST SSSMPSQQEE LRRMQVGSSR LSSDLPNKYR KDFQGSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-2499160163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008239644.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239644.10.0PREDICTED: ethylene-responsive transcription factor ERF114-like
SwissprotQ9FH541e-49EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A314ZHP50.0A0A314ZHP5_PRUYE; Ethylene-responsive transcription factor ERF114-like
STRINGXP_008239644.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.11e-37ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]