PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008239394.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 530aa    MW: 59011 Da    PI: 7.755
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008239394.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.13.1e-08167184926
                     GGGTS--TTTTT-SS-SS CS
         zf-CCCH   9 fartGtCkyGdrCkFaHg 26 
                     +++tGtCk+G++C+F+H+
  XP_008239394.1 167 YLETGTCKFGPNCRFNHP 184
                     89***************8 PP
2zf-CCCH283.8e-09257277626
                     -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                     C  +++tGtC++G++CkF+H+
  XP_008239394.1 257 CWSYLKTGTCNFGPSCKFNHP 277
                     668*****************8 PP
3zf-CCCH23.59.8e-08328352226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++++++G Ck   +C+F+H+
  XP_008239394.1 328 GEKECPYYMKNGSCKSATNCTFNHP 352
                     7899********************9 PP
4zf-CCCH26.11.5e-08452478127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C++f+r G Ck+ ++Ck++H++
  XP_008239394.1 452 PGQPICNYFLRKGDCKHRSNCKYHHPK 478
                     5789*********************96 PP
5zf-CCCH19.12.3e-06499523226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++ +C  ++ +G+C+ G+ CkF H+
  XP_008239394.1 499 GENICTQYSSYGICNSGPACKFDHP 523
                     6789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.85158185IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.361158186IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5167184IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-5250279IPR000571Zinc finger, CCCH-type
SMARTSM003560.71251278IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.188251279IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6257277IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-4326353IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.159326354IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-5327353IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-4328352IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-4451478IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.436451479IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-4453478IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-5454480IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6496522IPR000571Zinc finger, CCCH-type
SMARTSM003560.0034497524IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.713497525IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4499523IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MLPAAAVRVL LPVSASVIYV IYRYLRSGRQ IESSPNTSNN DVVPPPNSGN SDVVPYPELS  60
DRDRTILEEI LNNDVLLDKI RAIEPAFLDG LRKIKPAVLR EMVFDSAELD PVIVDTICKL  120
SLKGGKEEGE ENENGIVNET KSEERDEERS RSRHFSVRSG ARDCWCYLET GTCKFGPNCR  180
FNHPCITTKN NQNSFRSGGR RPNLYTTPNP GNDNVFPPNP GDPDHENGNG NKTQSEERDK  240
ERSRIHHYPV RFEAGDCWSY LKTGTCNFGP SCKFNHPCRR KNRKNNQNYF RSGGFKPGNA  300
FSFNPRRGEP SVAPVQKLNF MDLPIRPGEK ECPYYMKNGS CKSATNCTFN HPDPTTIGES  360
GPPCGYIDGG PAPVQGASSS TAWDSLCVPM IPPSQGIPSQ NTEWNGSQDP EYLPERSIPA  420
PPPYVMNKAV TETNIYEPNP QQKQVEEFPE RPGQPICNYF LRKGDCKHRS NCKYHHPKNQ  480
TAVSPSCALS GKGLPLRPGE NICTQYSSYG ICNSGPACKF DHPSLSTFLL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008239394.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239394.10.0PREDICTED: zinc finger CCCH domain-containing protein 67-like
TrEMBLA0A251P9990.0A0A251P999_PRUPE; Uncharacterized protein
STRINGXP_008239394.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3988822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.13e-81C3H family protein