PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008239392.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 804aa MW: 84803.4 Da PI: 9.4119 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.3 | 2.7e-08 | 244 | 268 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+f++r+ C +G +C+F+H+ XP_008239392.1 244 GEKDCSFYMRNASCMFGTNCRFNHP 268 7889********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0031 | 242 | 269 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.638 | 242 | 270 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-5 | 244 | 268 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.85E-5 | 245 | 269 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 804 aa Download sequence Send to blast |
MLPSARLLLP AAAAAAPVLY RFYKYLRDEV IRVPQNPPEL SDLDLAILEE IRKLGPALLD 60 KILKDPALLD EFRKIDPAVL HEFRKHDPAI IGKILQSCLK DNKEGEKEAD RSTCSGRETA 120 KENENGNEET DGGGGENKNE NGGEVEKKVV DKERSRSQHY PVRPGAGKGK TARKNRKNNQ 180 VSKDKMKERE GLAAEKPGQA ESKDYSRSGG RKCEKACSLN PGRGEPSVAP ILECNFLGLP 240 IRPGEKDCSF YMRNASCMFG TNCRFNHPDP TAVRESEPPS GYGNGGSASL QGASSSTAAP 300 WSAPRSLNDA PLYVPMVIPH VQIGSWGNAD GVWAQSEAGN KDEASGWTKP AFINENQNDS 360 CKKPSGVDDN KRASWGKADG GSTWTKQDGD ATWNKQGEDS TRNKQDSSSA WNKPAGDSSW 420 SKQAGGSSWC KQADVTAGHE SGGVGNQDNG WKRASSFGGS QSIDGVNGDQ PEDFNNNRSG 480 GNWRGGSGRG NSDRGGFRGG RGFVGRGGDR EEDRGGFGRR WGFGGRGRDR GSFGGRGRSD 540 KGGFGGRGYG GRGRGGYQSG GWSNRNESID NNSSGWSKGA DGAGEGWKRD NGGGSWNQGG 600 GSKNDWQGRN SSGWSSQSSG WNQSDVTKGI GGSGSGWNQT VEAKYTAGTQ DKGTGSHNEM 660 GRSWGNNWKS SDASNGDQSS RWKQSTAAKE VKGNTDQDGG RNKGPSSNAQ AGGWGNQGSG 720 WNKGTGSGFG GGTGEQPSAA VGGQSSDWKQ SSAASGAQSS SWNQSGEAKQ GTDEGAKPTN 780 SWGKAAAASS WGKSSDGGSS KGGW |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008239392.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008239389.1 | 0.0 | PREDICTED: protein RNA-directed DNA methylation 3-like | ||||
Refseq | XP_008239392.1 | 0.0 | PREDICTED: protein RNA-directed DNA methylation 3-like | ||||
Refseq | XP_016651179.1 | 0.0 | PREDICTED: protein RNA-directed DNA methylation 3-like | ||||
Refseq | XP_016651180.1 | 0.0 | PREDICTED: protein RNA-directed DNA methylation 3-like | ||||
Refseq | XP_016651181.1 | 0.0 | PREDICTED: protein RNA-directed DNA methylation 3-like | ||||
TrEMBL | A0A251P974 | 0.0 | A0A251P974_PRUPE; Uncharacterized protein | ||||
STRING | XP_008239389.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63260.1 | 6e-25 | C3H family protein |