PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008239051.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 356aa    MW: 39879.2 Da    PI: 5.3996
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008239051.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.26.9e-28130190259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK++ g+++prsYYrCt++   +C ++k+v+rs+edp+++eitY+g+H+++
  XP_008239051.1 130 EDGHSWRKYGQKDILGTKHPRSYYRCTYRntqSCYATKQVQRSDEDPTIFEITYKGKHTCS 190
                     8***************************98889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-28124190IPR003657WRKY domain
SuperFamilySSF1182903.92E-25128191IPR003657WRKY domain
SMARTSM007741.5E-38129191IPR003657WRKY domain
PROSITE profilePS5081121.712130187IPR003657WRKY domain
PfamPF031062.1E-26130189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MDSSKSWEHK SLLTEITEGM ELAKQLRLSL SAASSSDTRQ FLVQRILSSY EKALLILNFS  60
GPAQSTAGAI ASVPESLVSA NAGPCFDDYN KSPKDHQDLT DVSKKRKIMA KWTDHVMRVS  120
SENGIEGPHE DGHSWRKYGQ KDILGTKHPR SYYRCTYRNT QSCYATKQVQ RSDEDPTIFE  180
ITYKGKHTCS HGSNSVLPPP SPEQQEQKRN KQNNTSHQQQ SQGNQMSFPT NLRVDTKFLE  240
DRENMTSPFS FTSTSFGCMM ADDAFLSSML DDNNTFFDNF NHSLLSPAAG ESNYYLMPPS  300
QMRNIAGNEQ LSECGLTEII SANNSSTNSP IPDMDFPLEP VEIEPNFPFD TTGIFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-20130189968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008239051.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239051.10.0PREDICTED: probable WRKY transcription factor 53
TrEMBLA0A251P7530.0A0A251P753_PRUPE; Uncharacterized protein
STRINGXP_008239051.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.15e-55WRKY family protein