PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008238974.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 324aa    MW: 36900.3 Da    PI: 7.3972
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008238974.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.28e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l+++++ +G g+W+++++  g+ R++k+c++rw++yl
   XP_008238974.1 14 KGLWSPEEDEKLIRYITTYGHGCWRKVPEQAGLQRCGKSCRLRWLNYL 61
                     678*******************************************97 PP
2Myb_DNA-binding51.62.1e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg +T+eE++l+++++   G++ W++Ia++++ gRt++++k++w+++
   XP_008238974.1  67 RGGFTPEEEKLIIRLHGAVGNR-WASIAKCLP-GRTDNEIKNYWNSW 111
                      788*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-26664IPR009057Homeodomain-like
PROSITE profilePS5129424.138965IPR017930Myb domain
SuperFamilySSF466894.49E-3012108IPR009057Homeodomain-like
SMARTSM007174.7E-141363IPR001005SANT/Myb domain
PfamPF002493.7E-161461IPR001005SANT/Myb domain
CDDcd001677.75E-121761No hitNo description
Gene3DG3DSA:1.10.10.603.5E-2565116IPR009057Homeodomain-like
SMARTSM007171.4E-1666114IPR001005SANT/Myb domain
PROSITE profilePS5129418.91366116IPR017930Myb domain
PfamPF002493.7E-1567111IPR001005SANT/Myb domain
CDDcd001672.83E-1270112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGHHYCCKQR KVKKGLWSPE EDEKLIRYIT TYGHGCWRKV PEQAGLQRCG KSCRLRWLNY  60
LRPDIKRGGF TPEEEKLIIR LHGAVGNRWA SIAKCLPGRT DNEIKNYWNS WIKRKLEKPS  120
SPPTTSPSTI DHHQQHNYQM VCNFPNHQDF VNQNFMTKPR DQTLYPSPFP PFMFDAASVD  180
DIQANNINAQ AAEHFLISVL NSRNGTWNLD QQQHHHQVQA LPSSTSPFTN NNVDAHFLPA  240
LVGPTIGNNN MVPIEVESCN NIDEEGEISM ECLQSSTQEL NALVHPRQAQ HCSSSSFHFW  300
DSVEAPSSSN MSSANILSSF PSYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28141177109B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008238974.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008238974.10.0PREDICTED: transcription repressor MYB4-like
TrEMBLM5WCE00.0M5WCE0_PRUPE; Uncharacterized protein
STRINGXP_008238974.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41123358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.16e-71myb domain protein 103