PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008238480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 214aa MW: 23117 Da PI: 5.7633 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.8 | 7.7e-20 | 147 | 197 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg+f tae+Aa a+++a+ +++g XP_008238480.1 147 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAALAYDRAAYRMRG 197 8********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.6E-32 | 146 | 205 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.63E-32 | 146 | 205 | No hit | No description |
SuperFamily | SSF54171 | 1.83E-23 | 147 | 207 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.21 | 147 | 205 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-39 | 147 | 211 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.1E-14 | 147 | 197 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-11 | 148 | 159 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-11 | 171 | 187 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MYGQSGTDAD ITLLDSIRRH LLGETDLRMG NSMANSVTGP IFSRSSSFSS LYPCLTENWG 60 DLPLKEDDSE DMVLYGVLRD AVNVGWVPSL GSGSADTCSL NFSVKSEPEV CGGGEVEEKQ 120 PPPLHPAGRV PPPPKAGPAV VPAKGKHYRG VRQRPWGKFA AEIRDPAKNG ARVWLGTFET 180 AEDAALAYDR AAYRMRGSRA LLNFPLRVNS GEPD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-44 | 143 | 212 | 1 | 70 | ATERF1 |
3gcc_A | 4e-44 | 143 | 212 | 1 | 70 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008238480.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ026009 | 0.0 | FJ026009.1 Prunus salicina ethylene responsive transcription factor 1a (ERF1a) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008238480.1 | 1e-157 | PREDICTED: ethylene-responsive transcription factor 1A, partial | ||||
Swissprot | O80337 | 2e-78 | EF100_ARATH; Ethylene-responsive transcription factor 1A | ||||
TrEMBL | C0J9I9 | 1e-128 | C0J9I9_9ROSA; Ethylene responsive transcription factor 1a | ||||
STRING | XP_008238480.1 | 1e-156 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2239 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 2e-58 | ethylene responsive element binding factor 1 |
Publications ? help Back to Top | |||
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