PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008238224.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 342aa    MW: 37856.8 Da    PI: 7.4742
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008238224.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.43.3e-1092116126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC+ f++ GtC+y  +C+FaH+
  XP_008238224.1  92 FKTKLCCKFRA-GTCPYVTNCNFAHS 116
                     69*********.*************8 PP
2zf-CCCH18.73.2e-06165190126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     yk + C+ f+    C+yGd+C+F H+
  XP_008238224.1 165 YKGRHCKKFYTEEGCPYGDNCTFLHD 190
                     78888********************7 PP
3zf-CCCH43.65e-14222247126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C+ +  tG+C++G++C+FaHg
  XP_008238224.1 222 WKTRICNKWELTGYCPFGSKCHFAHG 247
                     8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.1E-1489124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-889122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.13191118IPR000571Zinc finger, CCCH-type
SMARTSM003560.00391117IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-792116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-9162192IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-7163192IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23164192IPR000571Zinc finger, CCCH-type
SMARTSM003560.058164191IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-16218251IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-10219252IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422221249IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-9221248IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-11222247IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MDYGRETNVV QVITGNSVGG DIWSADQAVW ATEDEYRVWN NGDALADTMS NSNYDQRQSQ  60
SRSGSEPPNK KSRNSQDATS SNRSKAIGKM FFKTKLCCKF RAGTCPYVTN CNFAHSIEEL  120
RRPPPNWQEI VAAHEEEKGV SSEPREEYQI PIVSTGYGVE TQRSYKGRHC KKFYTEEGCP  180
YGDNCTFLHD EQSKNRESVA ISLGPGGYGG AANGANNKPS NWKTRICNKW ELTGYCPFGS  240
KCHFAHGVAE LHRYGGGLVE GDARESSSAP PDNKQGGVPS KTPADTVVVS VPLVPHSDVY  300
HLGVPSQRSS IVNQRPGQRA HQKWKGPDKI SRIYGDWIDE IE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008238224.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008238224.10.0PREDICTED: zinc finger CCCH domain-containing protein 56
SwissprotQ84UQ31e-134C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLM5W9T60.0M5W9T6_PRUPE; Uncharacterized protein
STRINGXP_008238224.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77513342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-128C3H family protein