PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_008238184.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 836aa MW: 92902.2 Da PI: 5.4166 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.6 | 6.7e-21 | 98 | 153 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k XP_008238184.1 98 KKRYHRHTAHQIQEMENLFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 153 688999***********************************************998 PP | |||||||
2 | START | 161.1 | 8.1e-51 | 300 | 527 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla.... 77 la + +elvk+ a+ep+W + s e +n +e+++ f++ +++ea r+s+vv+m++ +lv +ld + +W e ++ XP_008238184.1 300 LAASSVDELVKMCHAGEPLWIRNSeigkEVLNVKEYTRMFPP--WplnlkhhssdqFRTEATRDSAVVIMNSINLVDCFLDAN-KWMELFPsivs 391 6788899*****************666666666666666655..15699999**999**************************.*********** PP EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS START 78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164 +a+t++vi+ + g lqlm+aelq+lsplvp R+ f+Ry++q ++g w+ivd +ds ++ +ss+ R ++lpSg+li++++ng+sk+ XP_008238184.1 392 RAKTVQVIQADpsgqanGSLQLMYAELQVLSPLVPtREAHFLRYCQQnAEEGCWAIVDFPIDSFHDNL-QSSFPRYKRLPSGCLIQDMPNGYSKI 485 ***********************************************999****************98.9************************* PP EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 165 twvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 twveh++ +++ +h++l + v sg+a+ga++w+a lqrqce+ XP_008238184.1 486 TWVEHAEIEEKPVHQILSHYVYSGMAFGAQRWLAILQRQCER 527 ****************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.89E-20 | 87 | 156 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-21 | 93 | 160 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.135 | 95 | 155 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.6E-20 | 96 | 159 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.27E-19 | 98 | 156 | No hit | No description |
Pfam | PF00046 | 2.1E-18 | 98 | 153 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 130 | 153 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 45.358 | 290 | 530 | IPR002913 | START domain |
SuperFamily | SSF55961 | 5.36E-34 | 291 | 529 | No hit | No description |
CDD | cd08875 | 2.74E-117 | 294 | 526 | No hit | No description |
SMART | SM00234 | 4.2E-35 | 299 | 527 | IPR002913 | START domain |
Pfam | PF01852 | 4.5E-43 | 300 | 527 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.85E-15 | 562 | 723 | No hit | No description |
SuperFamily | SSF55961 | 3.85E-15 | 759 | 797 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 836 aa Download sequence Send to blast |
MLEAKMYGDC QVMSTMGGGN VVTSETLFSS PIQNPNFNFM PSQLPFQPFS SIINPKEENG 60 LLMRGKEEMM ESGSGSEQVE EKSGNEQEAD QLQQPPKKKR YHRHTAHQIQ EMENLFKECP 120 HPDDKQRLKL SQELGLKPRQ VKFWFQNRRT QMKAQQDRSD NVMLRAENDS LKNENYRLQT 180 ALRNIICPNC GGPSMIADIG LDEQQLRLEN ARLREELERV CCLSSRYTTE RQIQTMAPGD 240 PLMSASSLDL DMNIYSRHFQ DPMTSCGDMI PMPLLPPEVP SHYNEGGVLL DEEKTLAVEL 300 AASSVDELVK MCHAGEPLWI RNSEIGKEVL NVKEYTRMFP PWPLNLKHHS SDQFRTEATR 360 DSAVVIMNSI NLVDCFLDAN KWMELFPSIV SRAKTVQVIQ ADPSGQANGS LQLMYAELQV 420 LSPLVPTREA HFLRYCQQNA EEGCWAIVDF PIDSFHDNLQ SSFPRYKRLP SGCLIQDMPN 480 GYSKITWVEH AEIEEKPVHQ ILSHYVYSGM AFGAQRWLAI LQRQCERVAS LMARNISDLG 540 VIPSPEARKN LMKLSQRMIR TFCVNMSTSN GQSWTALSDS PDDTVRITTR KVTDPGQPIG 600 VILSAVSTTW LPYSHFRVFE LLRDEHRRAQ LDVLSNGNSL HEVAHIANGS HPGNCISLLR 660 INVASNSAQN VELMLQESCT DESGSLVVYT TMDVDGIQLA MSGEDPSCIP LLPLGFVIVP 720 LHPMESTCPT PNHLTSSSPD HRQEDSTATT TTTSNVINSG CLLTVGLQVL ASTSPSAKLN 780 LSSVTAINNH LCNSVQQIIS ALSSSSDTCI AAATTENGSV GGGASCSDPT ASSPRQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_008238184.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008238184.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG5 isoform X2 | ||||
Swissprot | Q9FJS2 | 0.0 | HDG5_ARATH; Homeobox-leucine zipper protein HDG5 | ||||
TrEMBL | M5WW92 | 0.0 | M5WW92_PRUPE; Uncharacterized protein | ||||
STRING | XP_008238183.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G46880.1 | 0.0 | homeobox-7 |
Publications ? help Back to Top | |||
---|---|---|---|
|