PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008238120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | G2-like | ||||||||
Protein Properties | Length: 278aa MW: 31421 Da PI: 8.4403 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106 | 2.1e-33 | 28 | 82 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtp+LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl XP_008238120.1 28 KPRLRWTPDLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 82 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-32 | 25 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.564 | 25 | 85 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.1E-24 | 28 | 83 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 2.33E-16 | 28 | 84 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.8E-9 | 30 | 81 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 8.8E-24 | 132 | 176 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MERNYGGACD GEGNCGYENG VMMTRDPKPR LRWTPDLHDR FVDAVTKLGG PDKATPKSVL 60 RLMGLKGLTL YHLKSHLQKY RLGQHARKQN SGEEHNRENN RDSYVHFSNH HSTGSSAKSS 120 RGGNAEQGTL PFSEALKCQI EVQNRLQEQL EVQKKLQMRI EAQGKYLQTI LEKAQKGLSL 180 DMKGPTTIEA TRAQLTDFNL ALSNFMENIN EEDGRGKSSR STFEIYEEGN TEENKDAKLK 240 VERGSINFDL NTKGSYDYVG SNAGDFEPRR FRLQDTTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 7e-20 | 28 | 85 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 7e-20 | 28 | 85 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 7e-20 | 28 | 85 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 7e-20 | 28 | 85 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00544 | DAP | Transfer from AT5G45580 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008238120.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008238120.1 | 0.0 | PREDICTED: myb family transcription factor APL | ||||
Swissprot | C0SVS4 | 6e-86 | PHLB_ARATH; Myb family transcription factor PHL11 | ||||
TrEMBL | A0A314XWU5 | 0.0 | A0A314XWU5_PRUYE; Myb family transcription factor PHL11 | ||||
STRING | XP_008238120.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5101 | 31 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 1e-75 | G2-like family protein |
Publications ? help Back to Top | |||
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