PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008236969.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | SRS | ||||||||
Protein Properties | Length: 231aa MW: 25724.9 Da PI: 8.9803 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 198.4 | 2.3e-61 | 13 | 156 | 5 | 154 |
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskke 99 +++CqdCGnqakk+C+++RCRtCCks+gf+C+thvkstWvp+++rr++q aaa ++ + ++++ +++++ + +++ + +s++++ XP_008236969.1 13 ASRCQDCGNQAKKECVYMRCRTCCKSKGFHCQTHVKSTWVPVYRRRQQQ-LPAAAIPQQHLQLHHEQGHHHQN----PKRPAEHLTNPSSSTRL- 101 569*****************************************99854.44444444434344433333333....33334444445554454. PP DUF702 100 letsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + ++P+ev+s+a f+cvrvssv+d ++ aYqt+v igGhvfkGiLydqG+++ XP_008236969.1 102 DQEVNFPAEVNSMATFKCVRVSSVEDMVDQHAYQTSVVIGGHVFKGILYDQGPDH 156 44556************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 4.6E-59 | 14 | 155 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.2E-28 | 16 | 57 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 3.3E-24 | 107 | 154 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MVKRGGEGGV IMASRCQDCG NQAKKECVYM RCRTCCKSKG FHCQTHVKST WVPVYRRRQQ 60 QLPAAAIPQQ HLQLHHEQGH HHQNPKRPAE HLTNPSSSTR LDQEVNFPAE VNSMATFKCV 120 RVSSVEDMVD QHAYQTSVVI GGHVFKGILY DQGPDHHHQN CYTTVGQSSS SHHVLLNRKT 180 SNSINAAANT ASTSSAPDPA DRVPQHHPPS SYPLIPFNAF MPGTQFFINP K |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008236969.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008236969.1 | 1e-175 | PREDICTED: protein SHI RELATED SEQUENCE 3 | ||||
Swissprot | Q9SD40 | 2e-52 | SRS1_ARATH; Protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | A0A251MV94 | 1e-162 | A0A251MV94_PRUPE; Uncharacterized protein | ||||
STRING | XP_008236969.1 | 1e-174 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9969 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21400.1 | 4e-44 | SHI-related sequence3 |
Publications ? help Back to Top | |||
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