PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008235529.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 776aa MW: 86445.6 Da PI: 6.0931 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62.5 | 6.6e-20 | 629 | 725 | 2 | 95 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 +kvl++sdv+++gr+vlpkk ae+h +++ + ++ + +ed ++ +W+++++y ++ks++y+l+ ++ +Fv+angL+egDf+v++ ++ ++ XP_008235529.1 629 QKVLKQSDVGSLGRIVLPKKEAETHlpELEARDGISIPMEDiGTSHVWNMRYRYwpNNKSRMYLLE-NTGDFVRANGLQEGDFIVIY--SDvKCN 720 79*************************999999********7777*********777777777777.********************..555888 PP ..EEE CS B3 91 elvvk 95 +++++ XP_008235529.1 721 KYMIR 725 77766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.8E-28 | 621 | 734 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10015 | 1.94E-34 | 626 | 727 | No hit | No description |
SuperFamily | SSF101936 | 1.06E-22 | 627 | 723 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.207 | 628 | 730 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.5E-20 | 628 | 730 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-16 | 629 | 724 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009657 | Biological Process | plastid organization | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0001076 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 776 aa Download sequence Send to blast |
MKDVNIPISD GFGGGGAMEE LEDQEDNLGV DPSEMWLDDN DQETALLADV NDPSIFYNDH 60 FPPLPDFPCM SSSSSSSSTP APVKSVTSSS TSSSVSSSSS AASWAILRSD AEEDGERRQQ 120 HHHNSYNHRH QYSQADDQAV DVHALSSTAS MEISQPSDLG REGGAMDCMG AMETFGYMDL 180 FESNEFFDPS SIFQSDSLLM EQFQQDDDHQ QLLAPHQLQD PNEATAIIPQ QEQEQEVAVR 240 DDENNKKDDQ KENKEPDDMA MVFLEWLRSN RETVSAEDLR SVKIKKSTIE CAARRLGGGK 300 EAMKQLLKLV LEWVQTNHLQ KRRGNSLTTK DADIVAQQQY QDPFQNPNPN TSPRVLESNP 360 SCSFTQTPWM APPPHAAYDH AGGILVPTPP PPPPPAAYPS MMGYIAPDQY VNGPGPYQPS 420 PEYHHMIDSG QSTWPSSPFG MGTAHYGSFP DNNIHLAPPP QHHPQAFGYG SQYQPYQYFP 480 LNGEHQLMRL GSSATKEARK KRMARQRRLV SHHRHGHQQQ QHLNVQMPDH LLHQQHTRLV 540 GNAGDLNCAN SVPLQANPGN WFYWPTATAA PAMMPSITQE AAPPPPVQQM DRPASTQAQN 600 YSQGRSAAQE RQERRQGWKS EKNLKFLLQK VLKQSDVGSL GRIVLPKKEA ETHLPELEAR 660 DGISIPMEDI GTSHVWNMRY RYWPNNKSRM YLLENTGDFV RANGLQEGDF IVIYSDVKCN 720 KYMIRGVKVR QAGPKSEGNK RPGKSQRNQH ANTPAGTNGS SPSSVSASAS ATHRKQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 2e-39 | 624 | 731 | 1 | 108 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 2e-39 | 624 | 731 | 1 | 108 | B3 domain-containing transcription factor FUS3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Participates in abscisic acid-regulated gene expression during seed development. Regulates the transcription of SGR1 and SGR2 that are involved in leaf and embryo degreening. {ECO:0000269|PubMed:19531597, ECO:0000269|PubMed:24043799}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00083 | PBM | Transfer from AT3G24650 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008235529.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by silencing mediated by polycomb group (PcG) protein complex containing EMF1 and EMF2. {ECO:0000269|PubMed:19783648}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF411073 | 0.0 | AF411073.1 Prunus avium viviparous protein (vp1) mRNA, complete cds. | |||
GenBank | AF426832 | 0.0 | AF426832.1 Prunus avium ABI3-like transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008235529.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor ABI3 isoform X2 | ||||
Swissprot | Q01593 | 1e-171 | ABI3_ARATH; B3 domain-containing transcription factor ABI3 | ||||
TrEMBL | A0A251N358 | 0.0 | A0A251N358_PRUPE; Uncharacterized protein | ||||
STRING | XP_008235526.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 1e-142 | B3 family protein |