PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008235315.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 355aa    MW: 40061.3 Da    PI: 10.0568
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008235315.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.32.4e-31289346359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+
  XP_008235315.1 289 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHP 346
                     99***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.1E-17240285IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.8E-33275347IPR003657WRKY domain
PROSITE profilePS5081130.067282348IPR003657WRKY domain
SuperFamilySSF1182903.53E-27285347IPR003657WRKY domain
SMARTSM007742.0E-38287347IPR003657WRKY domain
PfamPF031063.0E-27289346IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEDVEEANKA AVESCHRVLS LFSQTQDQVQ YRNLMVETGK AVSKFKKVVS LLNTGLGHAR  60
VRKRKKLQIP FPERILLDNP NCITDYPSKT PHFIQSSFPE NPVQDLGLNV KNSLCLGNPS  120
LELSTNGKNP LQPAQQAPPT QYHFLQQQQQ QQQVQQQQQQ QQRLFLQQQQ QMKHQAEMMY  180
RRSNSGINLN FDSSSCTPTM SSTRSFISSL SIDGSVANFD GNSFHLIGAP LSSDQNSQHK  240
RKCSARGDDG SVKCGSSGRC HCSKKRKHRV KRSIKVPAIS NKLADIPPDD YSWRKYGQKP  300
IKGSPHPRGY YKCSSMRGCP ARKHVERCLE EPSMLIVTYE GEHNHPRIPS QSTTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-202833451071WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16165RKRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008235315.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2022910.0KT202291.1 Prunus dulcis WRKY transcription factor 21 (WRKY) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008235315.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043361e-130WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A251N2760.0A0A251N276_PRUPE; Uncharacterized protein
STRINGXP_008235315.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.11e-100WRKY DNA-binding protein 39