PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008235259.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 325aa    MW: 36512.3 Da    PI: 7.0511
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008235259.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.5e-14120171155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr ++P +   ++++ + a+i   A++++k+L+
  XP_008235259.1 120 QRMTHIAVERNRRKQMNDYLAALRAMMPAC---YAQRGDQASIIGGAINFVKELE 171
                     79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.76E-12118175No hitNo description
PROSITE profilePS5088815.44119170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-17119186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-15120186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-11120171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10125176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MTLEAVVLQA DRYNYGFKDF HAIGGGGGGS WSRGFGFGED HQEEKVYTDH HTLNNDVGQQ  60
GFNNLSLEAS MLQSVNDFET NSGPAFNRVF SSMEAPAAST GRRKRRRIQN IKNKEDMETQ  120
RMTHIAVERN RRKQMNDYLA ALRAMMPACY AQRGDQASII GGAINFVKEL EQLLQSLEGH  180
RRTEQQPDHL NLASIFSSFF TFPQYSTCLN SHGHGVYNSS VHPNELMAEK RSAIADVEVT  240
MVESHANVKV LMKKHPRQLL KMVLGLHSLG LMILHVNVTT ADNMILYTFS VKVEDNSQLT  300
SMNEIAADVY KMVGRIQEEA QLLAQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100108GRRKRRRIQ
2102106RKRRR
3103107KRRRI
4120131RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008235259.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894190.0KP689419.1 Prunus pseudocerasus isolate Unigene6324 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008235259.10.0PREDICTED: transcription factor bHLH94
SwissprotQ9SK913e-69BH094_ARATH; Transcription factor bHLH94
TrEMBLA0A315AQM90.0A0A315AQM9_PRUYE; BHLH transcription factor
STRINGXP_008235259.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.11e-68bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]