PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008235214.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

GRAS

Protein Properties

Length: 638aa MW: 71825.1 Da PI: 5.5773

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008235214.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	292.6	1.1e-89	273	636	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 + Ll++Ae v +++e+a++lL r + +as +g+p+qR+++yf+eAL++r+ r++ ++ ++ + + s + s++l+ + ++++ P++ + ++ XP_008235214.1 273 AHILLAAAEKVGYQQFERANRLLLRCEWIASFKGNPIQRVVFYFAEALRERIERETGSIPSKAEEMSISGHGLSTNLT-YLAYYQEVPFHSVMQF 366 699*************************************************777777666555555444555544.45588888**** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 t qaI e+v+ ++vH iD++i G+QW L+++La+R+e p l iT+vg k+++eetg+rL+++Ae+l++pf+f++++ +++ed++ XP_008235214.1 367 TGIQAIIESVALGSKVHLIDLEIRSGVQWTGLMESLAEREECPVeLLTITAVGV---AGKQKIEETGKRLTSVAESLNIPFQFKAVIISAMEDIK 458 ************************************7666489***...589******************************* PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285 + ++v+ +Ea+aV l l ++ +++ +le+ +++++++l P ++vv+e ea+hns+sF++rf++al yysa+fd+le+ + ++ee +++ XP_008235214.1 459 DQLFDVEDDEAVAVYAPLILRTMISRPSCLEN----LMRVMRNLTPCIMVVIEVEANHNSPSFVNRFIDALFYYSAFFDCLETCM--KQEEYRML 547 ********************88888888....*******************************************96..66666777 PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + ll++ i+n+va+eg+er++r ++ Wr+ + ++G+ ++++s+ qa+l+ ++++ +++ + ++l+ gWk+ p+ svSaW+ XP_008235214.1 548 TEDLLREGIRNIVAAEGSERVARSVKMDVWRAFFARFGMVEMNFSNASLYQASLVAKRFGCPSCTLDRNGKCLIVGWKGTPIHSVSAWK 636 7777****************************************************999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	43.101	246	616	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.7E-87	273	636	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 638 aa Download sequence Send to blast
MANAFFPFTP FDFGVLGGLT PQLEDYEKDQ EVAFKVKPGH LFAIEELGLG EVDSALSSEH 60 GFHQEDSKAK KGGLSSHFSK DPKPTYALSD NFNFDIVSSE HGFHQSNKSE KGLAHLFNDQ 120 DHRHYQQHHH YQQQQPKSNL DNFNFDFAFP PAQPIQDGTH QLTYNQFGGS DIAETNKHLP 180 HQSSLAVLEL LNSYGSAFKK LRGERTSSDT GNEAEASSYV GQQKLSTEEI MRVAGARYVQ 240 FSNQGYGDFY PLHPFGYALT GLSEEETKDA ELAHILLAAA EKVGYQQFER ANRLLLRCEW 300 IASFKGNPIQ RVVFYFAEAL RERIERETGS IPSKAEEMSI SGHGLSTNLT YLAYYQEVPF 360 HSVMQFTGIQ AIIESVALGS KVHLIDLEIR SGVQWTGLME SLAEREECPV ELLTITAVGV 420 AGKQKIEETG KRLTSVAESL NIPFQFKAVI ISAMEDIKDQ LFDVEDDEAV AVYAPLILRT 480 MISRPSCLEN LMRVMRNLTP CIMVVIEVEA NHNSPSFVNR FIDALFYYSA FFDCLETCMK 540 QEEYRMLTED LLREGIRNIV AAEGSERVAR SVKMDVWRAF FARFGMVEMN FSNASLYQAS 600 LVAKRFGCPS CTLDRNGKCL IVGWKGTPIH SVSAWKFR

Sequence ? help Back to Top

Protein Sequence Length: 638 aa Download sequence Send to blast

MANAFFPFTP FDFGVLGGLT PQLEDYEKDQ EVAFKVKPGH LFAIEELGLG EVDSALSSEH  60
GFHQEDSKAK KGGLSSHFSK DPKPTYALSD NFNFDIVSSE HGFHQSNKSE KGLAHLFNDQ  120
DHRHYQQHHH YQQQQPKSNL DNFNFDFAFP PAQPIQDGTH QLTYNQFGGS DIAETNKHLP  180
HQSSLAVLEL LNSYGSAFKK LRGERTSSDT GNEAEASSYV GQQKLSTEEI MRVAGARYVQ  240
FSNQGYGDFY PLHPFGYALT GLSEEETKDA ELAHILLAAA EKVGYQQFER ANRLLLRCEW  300
IASFKGNPIQ RVVFYFAEAL RERIERETGS IPSKAEEMSI SGHGLSTNLT YLAYYQEVPF  360
HSVMQFTGIQ AIIESVALGS KVHLIDLEIR SGVQWTGLME SLAEREECPV ELLTITAVGV  420
AGKQKIEETG KRLTSVAESL NIPFQFKAVI ISAMEDIKDQ LFDVEDDEAV AVYAPLILRT  480
MISRPSCLEN LMRVMRNLTP CIMVVIEVEA NHNSPSFVNR FIDALFYYSA FFDCLETCMK  540
QEEYRMLTED LLREGIRNIV AAEGSERVAR SVKMDVWRAF FARFGMVEMN FSNASLYQAS  600
LVAKRFGCPS CTLDRNGKCL IVGWKGTPIH SVSAWKFR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-40	280	638	27	381	Protein SCARECROW
5b3h_A	3e-40	280	638	26	380	Protein SCARECROW
5b3h_D	3e-40	280	638	26	380	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008235214.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008235214.1	0.0	PREDICTED: DELLA protein RGL1-like
TrEMBL	A0A314ZYE6	0.0	A0A314ZYE6_PRUYE; DELLA protein RGL1-like
STRING	XP_008235214.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF479	33	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	2e-53	RGA-like 1