PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008235205.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 579aa    MW: 66284 Da    PI: 6.8462
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008235205.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.1e-09524572247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      ++W+  E++ l  +v+q+G g+Wk+I          Rt  ++k++w+++
   XP_008235205.1 524 KKWSSLEEDTLRAGVEQYGVGRWKLILTSNRdifGERTQVDLKDKWRNL 572
                      58****************************9***99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM001294.1E-1914371IPR001752Kinesin motor domain
Gene3DG3DSA:3.40.850.109.4E-6214366IPR001752Kinesin motor domain
PROSITE profilePS5006745.5716361IPR001752Kinesin motor domain
SuperFamilySSF525404.75E-6119368IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF002251.6E-4977356IPR001752Kinesin motor domain
PRINTSPR003803.2E-18111132IPR001752Kinesin motor domain
PRINTSPR003803.2E-18222239IPR001752Kinesin motor domain
PROSITE patternPS004110255266IPR019821Kinesin motor domain, conserved site
PRINTSPR003803.2E-18256274IPR001752Kinesin motor domain
PRINTSPR003803.2E-18311332IPR001752Kinesin motor domain
PROSITE profilePS5129410.909518577IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-11519576IPR009057Homeodomain-like
SuperFamilySSF466891.95E-13520574IPR009057Homeodomain-like
SMARTSM007173.7E-6522575IPR001005SANT/Myb domain
PfamPF002491.1E-6524572IPR001005SANT/Myb domain
CDDcd116605.81E-17524574No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007018Biological Processmicrotubule-based movement
GO:0003677Molecular FunctionDNA binding
GO:0003777Molecular Functionmicrotubule motor activity
GO:0005524Molecular FunctionATP binding
GO:0008017Molecular Functionmicrotubule binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MDPATEETSD MAKSENLGLF LRIRPLLQSG VRGDRNPRFR RKSAFEPWFQ KMCLRVKTSR  60
SVTLSPPLAL ERGRTKTEVY DGFSQVFSPD SSQEEVYEKM MRPLVEDFLR GKSGMLAAFG  120
PSGSGKTHTI FGCNSQSGMV PLALQQIFKE TSDSTRSLFI SIFEIRCEGG KEERVFDLSP  180
NGVDLTMHRS TLKGLHEVVI SDWRHGEFVI SQALLRRATS PTNANSQSSR SQCVINLRIV  240
DDKSNGEVND QANDGVLIIV DLAGAEREKG TGNQGVRLLE SNFINKTSMV FCLCLRSLLE  300
HQKNPMKPLE KHFQDSLLTK YLRDYMEGKK RMALILTVKA GGEDYHNTSC LLKQATPYME  360
IKFNNEPSKR RLSPSFVLKG YKEKLEVAEH EIQHLRESNL ELEKELKDHK SQIEVQRLDD  420
DQVAQEIQRL RESNLELETE LKYLKSLIEV ERLADDQVAE ETQRLKESNL EPEKEVKDLK  480
SLIDVQISGD DQWDDSVVED LPNKNAISPS NEDNDRLARR RKGKKWSSLE EDTLRAGVEQ  540
YGVGRWKLIL TSNRDIFGER TQVDLKDKWR NLTRQHTHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6nje_A6e-258336669355Kinesin-like protein KIF22
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008235205.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008235205.10.0PREDICTED: kinesin-like protein KLP2 isoform X1
SwissprotQ6YU881e-111KN6_ORYSJ; Kinesin-like protein KIN-6
TrEMBLA0A251N4740.0A0A251N474_PRUPE; Kinesin-like protein
STRINGXP_008235205.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1048722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.21e-09MYB_related family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Guo L, et al.
    Evaluating the microtubule cytoskeleton and its interacting proteins in monocots by mining the rice genome.
    Ann. Bot., 2009. 103(3): p. 387-402
    [PMID:19106179]