PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_008234823.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 228aa MW: 24574.6 Da PI: 4.6779 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.1 | 1.4e-31 | 29 | 87 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+ dp+++++tY+g+Hnh+ XP_008234823.1 29 ADLWAWRKYGQKPIKGSPHPRNYYRCSSSkGCSARKQVERSTADPNIFVVTYTGDHNHP 87 699************************998****************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.4E-31 | 15 | 89 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.81E-27 | 23 | 89 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.579 | 23 | 89 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.7E-38 | 28 | 88 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-26 | 30 | 87 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007263 | Biological Process | nitric oxide mediated signal transduction | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 228 aa Download sequence Send to blast |
MPINSPRPRK RKCQQKRQVC QVSAENLSAD LWAWRKYGQK PIKGSPHPRN YYRCSSSKGC 60 SARKQVERST ADPNIFVVTY TGDHNHPRPT HRNSLAGSTR NKLSATAGQN QPINNDPGSP 120 PAQADQDAVA NNVNSDNSLD KENEELDEEE ERDENEIEDE DVEEDDVLIP NTAMPDEIFL 180 GLKQLGCTSS SGSGGSLAAG ASGDTFSDQE PSSLGSSWAA GATVGGGC |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 1e-21 | 30 | 90 | 18 | 80 | Disease resistance protein RRS1 |
5w3x_D | 1e-21 | 30 | 90 | 18 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00561 | DAP | Transfer from AT5G52830 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_008234823.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008234823.1 | 1e-170 | PREDICTED: probable WRKY transcription factor 27 | ||||
TrEMBL | A0A314UTY7 | 1e-110 | A0A314UTY7_PRUYE; Putative WRKY transcription factor 27 | ||||
STRING | XP_008234823.1 | 1e-169 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6794 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G52830.1 | 2e-48 | WRKY DNA-binding protein 27 |