PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008234789.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 359aa    MW: 40345.9 Da    PI: 4.5091
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008234789.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.6e-19117166255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +g+W+AeIrdp     r  r +lg+f taeeAa  +++a+ kl+g
  XP_008234789.1 117 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTFETAEEAAMVYDNAAIKLRG 166
                     89*******.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.4E-30116174IPR001471AP2/ERF domain
PROSITE profilePS5103223.591117174IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-21117173IPR016177DNA-binding domain
SMARTSM003801.9E-38117180IPR001471AP2/ERF domain
CDDcd000184.79E-33117173No hitNo description
PfamPF008475.1E-12117166IPR001471AP2/ERF domain
PRINTSPR003672.5E-10118129IPR001471AP2/ERF domain
PRINTSPR003672.5E-10140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDSSILCPIK YTEHRITTKK LTKPRKKPTT ESTSSSIPRI VRISMTDPDA TDSSSGEEDQ  60
FFGRQRVKHY VNEINIETDF RNTLVLPNNG RKRSTVEPPA SRRTVKNSVS QTNGSRKFRG  120
VRQRPWGKWA AEIRDPARRV RLWLGTFETA EEAAMVYDNA AIKLRGPDAL TNFVSPLPKE  180
EEKPELPVEP EAEPVIEVEI TNGTTSGSGY DSGSESHNNL SSPTSVLHFR TQPKMEEAHE  240
PQKLQVFDQV MQECEDETVT NFASDDLGNY LPLDFPYLDD VFSFPAPDSP LFFDTPMFFD  300
DDATAAAATL PECLLKENFS DMFRDTYDTS LSPTTSSMCQ GGEDYFQDIL FGSDPLVVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-22116173159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-22116173462ATERF1
3gcc_A7e-22116173462ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008234789.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008234789.10.0PREDICTED: ethylene-responsive transcription factor CRF4
TrEMBLA0A251QNU50.0A0A251QNU5_PRUPE; Uncharacterized protein
STRINGXP_008234789.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-52cytokinin response factor 4