PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008234474.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 268aa MW: 29169.7 Da PI: 5.8445 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.5 | 1.7e-18 | 105 | 155 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+Wv+e+r+p +k++r++lg+f tae+Aa+a++ a+ +l+g XP_008234474.1 105 PVYRGVRRRN-SGKWVSEVREP---NKKTRIWLGTFPTAEMAARAHDVAAIALRG 155 68*****888.8******9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.3E-13 | 105 | 155 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-21 | 106 | 165 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.7E-32 | 106 | 169 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-32 | 106 | 165 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.853 | 106 | 163 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-9 | 107 | 118 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.05E-32 | 107 | 165 | No hit | No description |
PRINTS | PR00367 | 3.0E-9 | 129 | 145 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MAKGLEWGRS GEVNQKGGIK PQKQALKLEH ITISSQGEKF RLSKMGYVDP QPCGASSEVP 60 ESSSASDNSS ARPLSMNFSD DEVLLASTYP KKRAGRKKFK ETRHPVYRGV RRRNSGKWVS 120 EVREPNKKTR IWLGTFPTAE MAARAHDVAA IALRGRSACL NFADSAWRLP VPASANAKDI 180 QTTASEAAEA FRPPAEGSDE VSGASAVAPS ECASASEQVF YMDEEAVFGM PGLLANMAEG 240 MLLSPPLYTE DDDDVEFYAD VPLWSYSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-15 | 104 | 162 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00557 | DAP | Transfer from AT5G51990 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008234474.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR676534 | 0.0 | KR676534.1 Prunus mume CBF/DREB1-like protein f (CBFf) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008234474.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 1B | ||||
Swissprot | Q9FJ93 | 9e-75 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | M5X208 | 1e-143 | M5X208_PRUPE; C-repeat binding factor | ||||
STRING | XP_008234474.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 2e-76 | C-repeat-binding factor 4 |
Publications ? help Back to Top | |||
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