PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008234446.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 263aa    MW: 29856.4 Da    PI: 7.649
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008234446.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.9e-19128178255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp +ng  +r++lg++ t eeAa a+++a+ +++g
  XP_008234446.1 128 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETSEEAALAYDRAAYRMRG 178
                     7********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.5E-32127187IPR001471AP2/ERF domain
PfamPF008479.4E-15128178IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-23128188IPR016177DNA-binding domain
PROSITE profilePS5103224.197128186IPR001471AP2/ERF domain
SMARTSM003801.6E-36128192IPR001471AP2/ERF domain
CDDcd000181.71E-31128187No hitNo description
PRINTSPR003671.4E-10129140IPR001471AP2/ERF domain
PRINTSPR003671.4E-10152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MIMSDNNQSL MPCLTEQWGD LPFKVDDSED MIVYNSLNDA LSFGWFPDHS LYEYVKPEPL  60
LYDPFDHHHA FPNLFTQFQQ YHDVNNAPII LPFEHHHHHH HHHQKQVQVV DAADQNKAPK  120
SGVARGRHYR GVRQRPWGKF AAEIRDPAKN GARVWLGTYE TSEEAALAYD RAAYRMRGSK  180
ALLNFPHRIG LNEPPPVRVT GKRKEPEAEA AAAADASTTT PKSAKRTKAS SVAEHDHHQA  240
NVLRTRQKNS MGLLPLGEQL LVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-37124193170ATERF1
3gcc_A5e-37124193170ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008234446.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0260080.0FJ026008.1 Prunus salicina ethylene responsive transcription factor 1b (ERF1b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008234446.10.0PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotQ404791e-76ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLC0J9I81e-178C0J9I8_9ROSA; Ethylene responsive transcription factor 1b
STRINGXP_008234446.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1691658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.15e-56ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]