PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008234304.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 433aa    MW: 47122.4 Da    PI: 7.8852
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008234304.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.21.4e-08111131526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+++ + G C+yGd+CkF H+
  XP_008234304.1 111 VCNYWVQ-GNCSYGDKCKFLHC 131
                     7******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.4652349IPR000571Zinc finger, CCCH-type
SMARTSM003560.52448IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.324106133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6107130IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-6108132IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-6110131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-6110128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.109.8E-17129242IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509786.87E-46131185IPR017986WD40-repeat-containing domain
SMARTSM003202.8E-6137176IPR001680WD40 repeat
PfamPF004004.3E-5140176IPR001680WD40 repeat
PROSITE profilePS5008213.984144185IPR001680WD40 repeat
PROSITE profilePS5029419.828144393IPR017986WD40-repeat-containing domain
PROSITE patternPS006780163177IPR019775WD40 repeat, conserved site
PRINTSPR003201.5E-5163177IPR020472G-protein beta WD-40 repeat
SMARTSM003205.1216253IPR001680WD40 repeat
SuperFamilySSF509786.87E-46223425IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.102.1E-31243425IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.0022260297IPR001680WD40 repeat
PfamPF004000.016264297IPR001680WD40 repeat
PROSITE profilePS5008212.079267306IPR001680WD40 repeat
PRINTSPR003201.5E-5284298IPR020472G-protein beta WD-40 repeat
SMARTSM003200.0066300337IPR001680WD40 repeat
PfamPF004000.038302336IPR001680WD40 repeat
PRINTSPR003201.5E-5324338IPR020472G-protein beta WD-40 repeat
SMARTSM003204.4341384IPR001680WD40 repeat
SMARTSM003203.3387424IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MDVDGGGNKR VFHRLGGPQS DPSKNQKVCY HWRAGKCNRH PCPFLHRELQ PPPSQQGLNG  60
TASSKRHHAF SATTDGPSAR NRGPNNFNGG ASSTWGRTGG TRVFVRKMEK VCNYWVQGNC  120
SYGDKCKFLH CWSMGDSFSL LTQLDGHQKV VSGIALPSGS DKLYTGSKDQ TVRVWDCQSG  180
QCLGVINLGG EVGCMISEGP WVFVGIPDVV KAWNTQTNSE LSLSGPVGQV YALVVGNDLL  240
FAGTQDGSIL AWKFNAVTNC FEPAASLKGH TLAVVSLVVG ANRLYSGSMD HSIRVWSLET  300
LQCIQTLTEH TSVVMSVLCW DQFLLSCSLD QQLKVWVATQ SGNLEVTYTH KEEHGLITLC  360
GMHDSEAKPV LLCACNDNTV RVYDLPAFSE RGKIFSKEEI RSIQVGPGGL FFTGDGTGQV  420
KVWKWVADLA STA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A8e-211234234323Tako8
6g6n_A8e-211234234323Tako8
6g6n_B8e-211234234323Tako8
6g6n_C8e-211234234323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008234304.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008234304.10.0PREDICTED: zinc finger CCCH domain-containing protein 63
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLM5X1760.0M5X176_PRUPE; Uncharacterized protein
STRINGXP_008234304.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein