PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008234092.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 385aa    MW: 42740.7 Da    PI: 7.1019
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008234092.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.51.5e-29203263259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqKe+ gs+fprsYYrCt++   +Cp+kk+v+r ++dp ++e++Y+geH+++
  XP_008234092.2 203 EDGFTWRKYGQKEIMGSRFPRSYYRCTHQklyNCPAKKQVQRLNNDPLTFEVMYRGEHTCH 263
                     7****************************999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-27199264IPR003657WRKY domain
SuperFamilySSF1182905.75E-26200264IPR003657WRKY domain
SMARTSM007741.0E-37202264IPR003657WRKY domain
PROSITE profilePS5081120.851203265IPR003657WRKY domain
PfamPF031065.9E-27203263IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MVHQHRSLTK AYIQLPFKFP HHHNMFKSKT SQKEPKQQLE AMDETTISLI LQACELARDL  60
ESNLHNLANQ PNLLSNSLDE ITKKFVTARE RVYGQDPSTS SSLHNMLTLV HQQQIGTSHV  120
QEWLRSSYAT QLVADQKEAK IGGCIDDDDA EVKGLQAMDI VSASDTNIAS SSSQRARRRK  180
DQGLISKITV PAPRIGNTEI PPEDGFTWRK YGQKEIMGSR FPRSYYRCTH QKLYNCPAKK  240
QVQRLNNDPL TFEVMYRGEH TCHMSATAPS IPPPSAEHHN ATQESMAQTL ATTTTADPPT  300
ASLWLSMDFN PIRGGGGSSS RIIGGDHGGG DGVGTSTTTR YGKEVDFPVV DLADAMFNSG  360
SSSSNSMDFI FHSAENKWES EDKKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-18203262968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008234092.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008234092.20.0PREDICTED: WRKY transcription factor 55
TrEMBLA0A251QLY20.0A0A251QLY2_PRUPE; Uncharacterized protein
STRINGXP_008234092.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86293142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-46WRKY DNA-binding protein 55