PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008234067.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 300aa    MW: 33891.3 Da    PI: 9.8733
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008234067.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.54.6e-1579163186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+++ + +Li+a  ++   l+rg+l++++W+ev++++        + +++ +qCk++++ l+k+yk +k   +       st+p++++l+
  XP_008234067.2  79 CWSEDATSTLITAWGDRYXXLNRGNLRQNDWKEVADAVnsglnGGVKASKTDVQCKNRIDTLKKKYKLEKSKPSP------STWPFYHRLH 163
                     7*************************************99944444557899***************99887775......68******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.5E-2578165No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MVVRPTPIEE LTSPPVQWTA RFPFPSQSDL FPHLSIDTQP IIITHTKKSR CFPLSPPPNP  60
KPFMHRPTRT RATGGRDDCW SEDATSTLIT AWGDRYXXLN RGNLRQNDWK EVADAVNSGL  120
NGGVKASKTD VQCKNRIDTL KKKYKLEKSK PSPSTWPFYH RLHSLIGSSP DAAVSTKRKP  180
SIPTLTVKSL DLKPKPPGGS RESSIGCEDG EDCNGDGVRK RRMEAVGLSG GAACRELAGA  240
ILKFGELYER MENLKQEQMM ELEKQRMEFT KELEFQRLNM FKDAQVELEK MKRPRNEVIS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAPTransfer from AT5G05550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008234067.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008234067.20.0PREDICTED: trihelix transcription factor ASIL1
TrEMBLA0A251QPP01e-157A0A251QPP0_PRUPE; Uncharacterized protein
STRINGXP_008234067.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.16e-58sequence-specific DNA binding transcription factors