PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008233783.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 347aa    MW: 37694.3 Da    PI: 6.882
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008233783.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.7e-1859108255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aa+a+++a+  l+g
  XP_008233783.1  59 RYRGVRQRS-WGKWVAEIREPRK---RTRKWLGTFATAEDAARAYDRAAIILYG 108
                     59****999.**********954...5**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.27359116IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2059116IPR016177DNA-binding domain
PfamPF008476.3E-1259104IPR001471AP2/ERF domain
SMARTSM003803.4E-3759122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-2959116IPR001471AP2/ERF domain
CDDcd000182.33E-2059118No hitNo description
PRINTSPR003672.7E-106071IPR001471AP2/ERF domain
PRINTSPR003672.7E-108298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006970Biological Processresponse to osmotic stress
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009744Biological Processresponse to sucrose
GO:0009749Biological Processresponse to glucose
GO:0010119Biological Processregulation of stomatal movement
GO:0010353Biological Processresponse to trehalose
GO:0010449Biological Processroot meristem growth
GO:0010896Biological Processregulation of triglyceride catabolic process
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0032880Biological Processregulation of protein localization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEDEHPLSPP AAPPHHPPQD NDNNNKSPDS TTASTATTPT ETTNKKCKGK GGPDNNKFRY  60
RGVRQRSWGK WVAEIREPRK RTRKWLGTFA TAEDAARAYD RAAIILYGSR AQLNLQPSGT  120
NSQSSTRGSS SSSSSCNSSS QTLRPLLPRP SGFGLTLPFP SSAHPVPLMA SGFVPYGVGV  180
GVYPSVAAAA ATSSVQLSQH HPHHINMRDQ DNLQNNPLLH QQQQQQQQVA VQQFHHQYPV  240
SDGGRGDTSI SYQNPNPSHD QYQELLHHNQ NNQADSCSFD DGNSIMGSGL SLSSSQPMPV  300
APGCSDPMSG VGPMSPLMWP LTSEEECAPS LWDYGDPFFS DFKGFDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1860115359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00674SELEXTransfer from GRMZM2G093595Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008233783.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008233783.10.0PREDICTED: ethylene-responsive transcription factor ABI4
TrEMBLA0A314XXW20.0A0A314XXW2_PRUYE; Ethylene-responsive transcription factor ABI4
STRINGXP_008233783.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88472940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.13e-31ERF family protein