PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008233206.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 357aa    MW: 39738.1 Da    PI: 4.649
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008233206.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.94.3e-28127188159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK++ g+++pr+YYrCt++   gC ++k+v++++ dp+++++tY+geH+++
  XP_008233206.1 127 LDDGYSWRKYGQKDILGATYPRGYYRCTHRgtqGCLATKQVQKADADPSTMVVTYRGEHTCS 188
                     59***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.5E-28124189IPR003657WRKY domain
SuperFamilySSF1182904.97E-25126188IPR003657WRKY domain
SMARTSM007742.0E-39127189IPR003657WRKY domain
PROSITE profilePS5081123.755127185IPR003657WRKY domain
PfamPF031061.1E-25128187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEKRKSMEWE QETLTSELTQ GKELAKQLMN CLHPSASQEK RDFLISKILF SYEKALSLLK  60
RDVGSDGEYH IPNTMLESPT SFGNGSPMSE ISDQDCKNKN VFKKRKTMPR WTEEVKVYSG  120
TGLDGSLDDG YSWRKYGQKD ILGATYPRGY YRCTHRGTQG CLATKQVQKA DADPSTMVVT  180
YRGEHTCSQV LQLARSSVLS LAKQASTGNQ NATREVEKPK ASEEMSFSFG AGLRVKTEDL  240
DTREDDIFPS FSFPSTPIEP ENVGDHIFCA TLMENDLMDG YSPTFASPAA TFEPDYLQAT  300
SSFGLGLDYV QTSESGLSEI ISAPTSVTNS PIGDFGFSLD DLDFHHFENP ESFAYES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-20126187768OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008233206.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008233206.10.0PREDICTED: probable WRKY transcription factor 46
TrEMBLM5X0100.0M5X010_PRUPE; Uncharacterized protein
STRINGXP_008233206.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.12e-45WRKY family protein