PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008232985.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

MYB_related

Protein Properties

Length: 349aa MW: 38270.9 Da PI: 8.3079

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008232985.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.3	1.7e-13	78	122	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky XP_008232985.1 78 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 122 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.27E-16	72	128	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.408	73	127	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-6	76	128	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-18	76	125	IPR006447	Myb domain, plants
SMART	SM00717	5.3E-11	77	125	IPR001005	SANT/Myb domain
Pfam	PF00249	3.0E-11	78	122	IPR001005	SANT/Myb domain
CDD	cd00167	2.30E-8	80	123	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MVSVNPNPAQ GFYLFDPMNM GLPGLNSMPP PTATATTASA ATSTTACTAS STPTNATSLL 60 AEDQSKKIRK PYTITKSRES WTEQEHDKFL EALQLFDRDW KKIEAFVGSK TVIQIRSHAQ 120 KYFLKVQKKG TSEHVPPPRP KRKATHPYPQ KAPKSAAVVS QVAGQFQSSS ALLEHGYVYQ 180 PDSSFALGTP VTSATLSSWS YNSVPPVNVS QITKDDGRLA GPTVAHNSCY SSSNESNPTT 240 WQMSEKVDRA DPGQPHRVLP DFAQVYKFIG SVFDPNATSH LERLKELDPI NLETVLLLMR 300 NLSLNLTSPE FEDHRKLLSS YDADSEKAKS DSNCNFSCIG KSENAILSA

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MVSVNPNPAQ GFYLFDPMNM GLPGLNSMPP PTATATTASA ATSTTACTAS STPTNATSLL  60
AEDQSKKIRK PYTITKSRES WTEQEHDKFL EALQLFDRDW KKIEAFVGSK TVIQIRSHAQ  120
KYFLKVQKKG TSEHVPPPRP KRKATHPYPQ KAPKSAAVVS QVAGQFQSSS ALLEHGYVYQ  180
PDSSFALGTP VTSATLSSWS YNSVPPVNVS QITKDDGRLA GPTVAHNSCY SSSNESNPTT  240
WQMSEKVDRA DPGQPHRVLP DFAQVYKFIG SVFDPNATSH LERLKELDPI NLETVLLLMR  300
NLSLNLTSPE FEDHRKLLSS YDADSEKAKS DSNCNFSCIG KSENAILSA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008232985.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008232985.1	0.0	PREDICTED: protein REVEILLE 3
Swissprot	Q6R0H0	1e-113	RVE3_ARATH; Protein REVEILLE 3
TrEMBL	A0A314UHP0	0.0	A0A314UHP0_PRUYE; Protein REVEILLE 3
STRING	XP_008232985.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1119	33	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01520.1	1e-101	MYB_related family protein

Publications ? help Back to Top
Manfield IW, et al. Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9 [PMID:16845059] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761] Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615]