PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008232978.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 361aa    MW: 39762.9 Da    PI: 7.6051
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008232978.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.8e-31185243259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+ver+++dp+++++tY+ eHnh+
  XP_008232978.1 185 ADIWAWRKYGQKPIKGSPYPRGYYRCSSSkGCMARKQVERNRSDPNMFIVTYTAEHNHP 243
                     69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.4E-31175245IPR003657WRKY domain
PROSITE profilePS5081134.727179245IPR003657WRKY domain
SuperFamilySSF1182902.62E-26182245IPR003657WRKY domain
SMARTSM007743.8E-37184244IPR003657WRKY domain
PfamPF031063.6E-26186243IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEDDWDLQAV VRGCSTGTTT SNRSTATTNS NNSTCFKISN FHSSPAFSSS FGTATLQPGL  60
QQQQFQVLFS LPDPIKPRNA MEDLHELYKP FFPKSQPPLS SQITPPPNLS PLTSLTPLTA  120
PKDQTHPIQQ HQHQNHYQQQ QQQQQQQQQS KPSSHSVSST TTPRSKKRKN QLKKVCQVPA  180
ESLSADIWAW RKYGQKPIKG SPYPRGYYRC SSSKGCMARK QVERNRSDPN MFIVTYTAEH  240
NHPAPTHRNS LAGSTRQKPF SPQTVTGSDS TKPTSPATSA SVDEDPVVPQ STTMESFKEE  300
KGSPMVDDDD DELFGMCDSV VSDDFFVGLE GLAGDYFSDH SPTSFGVPWV SSNAATAAGS  360
I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B8e-24169246280Disease resistance protein RRS1
5w3x_D8e-24169246280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008232978.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008232978.10.0PREDICTED: WRKY transcription factor 22
TrEMBLM5X0140.0M5X014_PRUPE; Uncharacterized protein
STRINGXP_008232978.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42053259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.17e-72WRKY family protein