PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008232900.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 649aa    MW: 72931.4 Da    PI: 4.8369
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008232900.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.40.000144654981755
                     HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     N+++  Lr+++P+ +       ++Ka++L  +++Y+k+L+
  XP_008232900.1 465 NEKLLVLRSMVPSiS------EVDKASVLDDTIKYLKELE 498
                     89999********66......8***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-5215196IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.328448497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0034457503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.78E-5463502No hitNo description
SuperFamilySSF474591.83E-7464510IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-7465512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MANGTQNHER VPENLRKQFA VAVRSIKWSY AIFWSLSTSQ QGVLEWCEGY YNGDIKTRKT  60
VEGVELKTDK MGLERNAQLR ELYKSLLEGE TEPQAKAPSA ALNPEDLSDA EWYYLLCMSF  120
VFNPGEGLPG RALANGQTIW LCDAQYADSK VFSRSLLAKS ASIQTVVCFP YLGGVVELGV  180
TELVPEDLSL IQHIKASLLD FSKPDCSEKS SSAPHKADDD SDQVLAKVDH EIVDTLALEN  240
LYSPSEEIKF DPMGINDLHG NHEEFNMDSP EECSNGCEHN HQTEDSFMPE GINDGASQVQ  300
SWHFMDEDFS IGVQDSMNSS DCISEAFVNK KRAYSSPRHE SVNRNHLKEL ENLNDTNFSS  360
LDLGPADDHI HYTRTLSNIL GRSTRLTENP CSCDGDCKSS FVTWKKGVVD NCRPTVHQKI  420
LKKVLFTVPL MCGASSQNTI QDGLSKLQSD DIHKGYVMPD KLKENEKLLV LRSMVPSISE  480
VDKASVLDDT IKYLKELEAR AEEMESCMDT VEAIARRKYL DRAEKTSDNY DKIKMDNVKK  540
PWLNKRKARD IDETDPDLNR LVPRESLPLD VKVILKEQEV LIEMRCPYRE YILLDIMDAI  600
NNLYLDAHSV QSSTLDGVLT LSLTSKFRGA AVAPVGMIKQ ALWKIAGKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A5e-152719462227Transcription factor MYC3
4ywc_A5e-152719462227Transcription factor MYC3
4ywc_B5e-152719462227Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008232900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894050.0KP689405.1 Prunus pseudocerasus isolate Unigene457 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008232900.10.0PREDICTED: transcription factor EGL1
TrEMBLM5XIR90.0M5XIR9_PRUPE; Uncharacterized protein
STRINGXP_008232900.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24443463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-156bHLH family protein