PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008232622.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family SBP
Protein Properties Length: 287aa    MW: 31593.6 Da    PI: 8.5181
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008232622.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.41.5e-41127204178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +Cq+egC+adls+ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh l efD++krsCrrrLa+hn+rrrk+q+
  XP_008232622.2 127 RCQAEGCTADLSHAKHYHRRHKVCEFHSKASTVIANGLTQRFCQQCSRFHLLPEFDNGKRSCRRRLADHNRRRRKTQQ 204
                     6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.7E-35122189IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.565125202IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.37E-38126206IPR004333Transcription factor, SBP-box
PfamPF031107.9E-31128201IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MLDYEWGNPS TVMLSPDNDP GSDPTRHHHN TTTIFDHYAS QASQASAFNN LVPPPPPPQQ  60
QSHHAAFAHH FNSAQAQQLH SIYDAHAYAS ASAYAPPNHH PLLSLDPIHG GAAHGPAPDP  120
GSPHAPRCQA EGCTADLSHA KHYHRRHKVC EFHSKASTVI ANGLTQRFCQ QCSRFHLLPE  180
FDNGKRSCRR RLADHNRRRR KTQQTNQENH NSQVQQLVEN ARNSSSDNVA RSPPESAAHS  240
ASSVTVALSP PRMTLDCFRQ RPYQAAATTS SGSSAHFFSQ VGKSQLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-33120201384squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008232622.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ3549646e-72JQ354964.1 Betula platyphylla squamosa promoter binding protein-like 8 (SPL8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008232622.20.0PREDICTED: LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 8
TrEMBLM5X0V71e-175M5X0V7_PRUPE; Uncharacterized protein
STRINGXP_008232622.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68013348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.12e-36squamosa promoter binding protein-like 8