PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008232505.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

ERF

Protein Properties

Length: 217aa MW: 24295 Da PI: 6.9557

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008232505.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.3	3.7e-18	105	155	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg++ t+e+A a+++a+ k++g XP_008232505.1 105 HYRGVRRRP-WGKFAAEIRDPAKNG--ARVWLGTYETPEDAGLAYDRAAFKIRG 155 7******.*******9987..***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.5E-30	104	164	IPR001471	AP2/ERF domain
Pfam	PF00847	1.1E-12	105	155	IPR001471	AP2/ERF domain
CDD	cd00018	1.48E-28	105	165	No hit	No description
PROSITE profile	PS51032	23.38	105	163	IPR001471	AP2/ERF domain
SMART	SM00380	3.1E-36	105	169	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.81E-22	105	164	IPR016177	DNA-binding domain
PRINTS	PR00367	5.4E-13	106	117	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.4E-13	145	165	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MYGETTLELE SNLALLESIR HHLLDDLEPQ ATSFSGNNVS TFPFFVTENW WESSLEAEHV 60 HNTMQDKLEV LRDVNYVGCV VSNDEVQLKE QVAEGAVHAP RGERHYRGVR RRPWGKFAAE 120 IRDPAKNGAR VWLGTYETPE DAGLAYDRAA FKIRGCKAKL NFPHLIGSSN VEPVRVTPKR 180 RRSPDQCSSS SSSAYTSDNG SSKPKRREAG VDNHLAA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	8e-32	104	169	4	69	ATERF1
3gcc_A	8e-32	104	169	4	69	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269\|PubMed:11950980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008232505.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269\|PubMed:11950980, ECO:0000269\|PubMed:12068110}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008232505.1	1e-162	PREDICTED: ethylene-responsive transcription factor 1-like
Swissprot	Q8L9K1	4e-45	ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBL	A0A314V201	1e-144	A0A314V201_PRUYE; Ethylene-responsive transcription factor 13
STRING	XP_008232505.1	1e-162	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF512	33	157

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44840.1	3e-38	ethylene-responsive element binding factor 13

Publications ? help Back to Top
Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum. Plant Physiol., 2007. 145(4): p. 1588-99 [PMID:17965181] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]