PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_008232503.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 241aa MW: 26314 Da PI: 5.5763 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.9 | 1.5e-19 | 95 | 145 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+++AeIrdp++ng +r++lg++ tae+A a+++a+ k++g XP_008232503.1 95 HFRGVRRRP-WGKYAAEIRDPKKNG--ARVWLGTYETAEDASLAYDRAAYKMRG 145 69*******.***********9998..*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.4E-31 | 94 | 154 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.3E-13 | 95 | 145 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-36 | 95 | 159 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.54E-29 | 95 | 155 | No hit | No description |
SuperFamily | SSF54171 | 1.57E-22 | 95 | 154 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.196 | 95 | 153 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-13 | 96 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-13 | 135 | 155 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 241 aa Download sequence Send to blast |
MSTESITSSN WALLESIRQH LLDDDFETQA TFLAGVAEDD APLYDCAPST SSSSHAHFGG 60 EGWGDTIAIL DHDLDRSNDV KVEARVNHAP SSGRHFRGVR RRPWGKYAAE IRDPKKNGAR 120 VWLGTYETAE DASLAYDRAA YKMRGSKAKL NFPHLIGSHD SEPGRVAPKR GSPEPSFSSA 180 TSSDDGGSPT LKKRKSGVDS AAKAKLEEAA EQFHVFQVDS LTLGGQLFVD ELYTYDELLA 240 I |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-32 | 91 | 158 | 1 | 68 | ATERF1 |
3gcc_A | 1e-32 | 91 | 158 | 1 | 68 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_008232503.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008232503.1 | 1e-178 | PREDICTED: ethylene-responsive transcription factor 13-like | ||||
Swissprot | Q40479 | 7e-49 | ERF2_TOBAC; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | A0A314UW56 | 1e-162 | A0A314UW56_PRUYE; Ethylene-responsive transcription factor 13-like | ||||
STRING | XP_008232503.1 | 1e-177 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF512 | 33 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G44840.1 | 4e-44 | ethylene-responsive element binding factor 13 |
Publications ? help Back to Top | |||
---|---|---|---|
|