PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008232472.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 215aa MW: 23950 Da PI: 7.2161 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.6 | 1.5e-18 | 107 | 157 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg++ t+e+A a+++a+ kl+g XP_008232472.1 107 HYRGVRRRP-WGKFAAEIRDPAKNG--ARVWLGTYETPEDAGLAYDRAAFKLRG 157 7********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-30 | 106 | 166 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.4E-13 | 107 | 157 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.79E-30 | 107 | 167 | No hit | No description |
SuperFamily | SSF54171 | 1.24E-22 | 107 | 166 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.6E-36 | 107 | 171 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.485 | 107 | 165 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-13 | 108 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-13 | 147 | 167 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MYGEKTLELE SDLAFLESIR HHLLDDLEPQ AMSFTGTNVP LIFPLSVTEN GWESSLKAEH 60 IENDVQGMLG ALNDVNYVGC VVSDDKIELK EQKVAARAVH PPREERHYRG VRRRPWGKFA 120 AEIRDPAKNG ARVWLGTYET PEDAGLAYDR AAFKLRGCKA RLNFPHLIGS SNVEPVRVSP 180 KRRRSLDLSS SSFSSDNGSP KPKLSKDGVD NHLAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-32 | 106 | 171 | 4 | 69 | ATERF1 |
3gcc_A | 9e-32 | 106 | 171 | 4 | 69 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008232472.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008232472.1 | 1e-159 | PREDICTED: ethylene-responsive transcription factor 1A-like | ||||
TrEMBL | M5W4U8 | 1e-136 | M5W4U8_PRUPE; Uncharacterized protein | ||||
STRING | XP_008232472.1 | 1e-158 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF512 | 33 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 7e-36 | ethylene-responsive element binding factor 13 |