PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008232471.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 218aa MW: 23789.3 Da PI: 7.1287 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.5 | 8e-19 | 110 | 159 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrdp +ng +r +lg++ tae+Aa a+++a+ k++g XP_008232471.1 110 YRGVRQRP-WGKYAAEIRDPAKNG--ARMWLGTYETAEDAALAYDRAAFKIRG 159 9*******.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.33E-30 | 108 | 169 | No hit | No description |
SMART | SM00380 | 4.6E-39 | 109 | 173 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.236 | 109 | 167 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-23 | 109 | 168 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-32 | 109 | 168 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-12 | 110 | 159 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-13 | 110 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-13 | 149 | 169 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MLGDEKSSLE SDFALLETIH QHLLDDNYFH GTHMASLFPN IPPAVEDLGK LSIVVPGESS 60 ESSSWSAPNQ NGVAEPAPAT WADTTEVKDN VQPKLAARET HAPPRWRQNY RGVRQRPWGK 120 YAAEIRDPAK NGARMWLGTY ETAEDAALAY DRAAFKIRGS KALLNFPHLI GSADDACDRA 180 RVTSTRRYRE CCDSLASSSD GGSAKRRRSS GVGSVGSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-33 | 108 | 174 | 4 | 70 | ATERF1 |
3gcc_A | 1e-33 | 108 | 174 | 4 | 70 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008232471.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008232471.1 | 1e-162 | PREDICTED: ethylene-responsive transcription factor 13-like | ||||
TrEMBL | M5W7J0 | 1e-132 | M5W7J0_PRUPE; Uncharacterized protein | ||||
STRING | XP_008232471.1 | 1e-161 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF512 | 33 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 1e-29 | ethylene-responsive element binding factor 13 |