PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008232470.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 272aa    MW: 29876.2 Da    PI: 4.7798
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008232470.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.2e-20127177255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +g+++AeIrdp++ng  +r++lg++ tae+Aa a+++a+ k++g
  XP_008232470.1 127 HFRGVRRRP-WGKYAAEIRDPKKNG--ARVWLGTYETAEDAALAYDKAAFKMRG 177
                     69*******.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-32126186IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-23127186IPR016177DNA-binding domain
PfamPF008477.0E-14127177IPR001471AP2/ERF domain
CDDcd000185.77E-32127187No hitNo description
SMARTSM003807.3E-40127191IPR001471AP2/ERF domain
PROSITE profilePS5103223.815127185IPR001471AP2/ERF domain
PRINTSPR003674.3E-10128139IPR001471AP2/ERF domain
PRINTSPR003674.3E-10151167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MFGEISLESD FALLESIRQH LLDDNFDTVL EESSPTGSGS PPPMFCRSFS FSALFSAESW  60
SDMPLKVDDN NDVVVYSGST DNGWSPSSDH SHIEVVETTP MKPEPQEVVL EGIEVVPETH  120
APSSGRHFRG VRRRPWGKYA AEIRDPKKNG ARVWLGTYET AEDAALAYDK AAFKMRGSKA  180
KLNFPHLIGS EGCEPVRITP KRRAPESSSW SSSSDSGSPR PKRRNTGVGS VAGAESGSES  240
LVEMVEMSQL AVVDQWLNEL NTTVFPMPHE TN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-32123190168ATERF1
3gcc_A1e-32123190168ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00311DAPTransfer from AT2G44840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008232470.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008232470.10.0PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotQ9LW502e-59ERF2_NICSY; Ethylene-responsive transcription factor 2
TrEMBLA0A251QFB21e-179A0A251QFB2_PRUPE; Uncharacterized protein
STRINGXP_008232470.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-43ethylene-responsive element binding factor 13