PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008232450.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 299aa    MW: 33247.2 Da    PI: 7.3434
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008232450.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.9e-18129183256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq   Le+ F+++++++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  XP_008232450.1 129 RKKLRLTKEQSLLLEDTFKEHNTLNPRQKQALAKQLNLRPRQVEVWFQNRRARTK 183
                     78889************************************************98 PP
2HD-ZIP_I/II123.88e-40129218191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl+keq+ lLE++F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+e+n+rL+kev+eLr +l
  XP_008232450.1 129 RKKLRLTKEQSLLLEDTFKEHNTLNPRQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCEKLTEDNRRLQKEVQELR-AL 218
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575118No hitNo description
PfamPF046184.9E-301100IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.603.9E-19107183IPR009057Homeodomain-like
SuperFamilySSF466891.37E-19113186IPR009057Homeodomain-like
PROSITE profilePS5007117.2125185IPR001356Homeobox domain
SMARTSM003896.8E-15127189IPR001356Homeobox domain
PfamPF000461.4E-15129183IPR001356Homeobox domain
CDDcd000861.02E-14129186No hitNo description
PROSITE patternPS000270160183IPR017970Homeobox, conserved site
PfamPF021831.4E-10185219IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.7E-25185228IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGEKDDGLGL GLSLSLGCKP NENESSLHLN LMEKPSQSMQ NHQHRTSWNE IFQFPDRNPD  60
ARSCLRGIDV NQAAEFEEEN GVSSPNSTVS SLSGKRSERE PIGDENEAER TSCSHGSDDE  120
DGNGGDLSRK KLRLTKEQSL LLEDTFKEHN TLNPRQKQAL AKQLNLRPRQ VEVWFQNRRA  180
RTKLKQTEVD CELLKRCCEK LTEDNRRLQK EVQELRALKL SPQLYMQMSP PTTLTMCPSC  240
ERVAVSSLSS SAAAAASSTA PANGQTCQSG APNVQRPIPI SPWATLPIQR RPLDASAPK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127133SRKKLRL
2177185RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008232450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008232450.10.0PREDICTED: homeobox-leucine zipper protein HAT3
SwissprotP466022e-99HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLM5VSJ60.0M5VSJ6_PRUPE; Uncharacterized protein
STRINGXP_008232450.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.17e-92homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]