PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008231642.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 887aa    MW: 98467.7 Da    PI: 9.2746
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008231642.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54.1e-07245265526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C +fa+ G C++G++CkF H 
  XP_008231642.1 245 YCTDFAK-GKCRRGSSCKFDHH 265
                     5******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0083182208IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.216182209IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-5186206IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.929240267IPR000571Zinc finger, CCCH-type
SMARTSM003560.0043241266IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-5245265IPR000571Zinc finger, CCCH-type
SMARTSM003560.085300326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.671300327IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 887 aa     Download sequence    Send to blast
MSRSSRKRSS KWDLAEEPQF EDANVQDNGW MGKPGRPFHH KESGREWLSS ELAGSNGSKW  60
SGLETNDMQR SKHDLGLASR EPLPGSRGSH KIESINKGSN RYMDDSMVWD GDGNCSTRMS  120
PGLDEWRQHR SRSPKSGWSR SLRGRSRSWS RSRSRSQSWS RSPDRGYRRE SVFLDRNRSR  180
SGVSAQLCKD FTAGRCRRAS DCQFLHEGSS NYDDSWESRH RKGGASKYSP DTGDYPLKSG  240
RSSVYCTDFA KGKCRRGSSC KFDHHRASDG YSKGSMNERE NERRKRDAST ERGADRVPHR  300
SGDIPCKFFA AGNCRNKKYC RFSHHIQARV SPERKSRDGR WGLSDAGPAW DGPKWSDTVA  360
LSDASKLTAD NNGNISVPEL RPSAWSMDDN RWGHGLNNDN QKCADPSVIH EAAQRNEKDT  420
HLWKEDNVDA HVGPPKSRDT EKWLGDMSPD WNYTVQSSNH VGKEEHSGNA LGSEPSSQVH  480
GAASIMQPMI AERSNFLQNK DMREDGAIPL PYDDRNPIEK NASSRNDLNV SANIMPRQSF  540
DNSCQSSSAF PFSGLSTVRQ SQTLIPTHPQ GGGIVKSPQD TLSSESKSVI KLDIGDAKTS  600
LVTGIPQVPN VVGDKELVQL TNLSASLAQF LGNHQQHSQY FAVLNSQNAP PPLAKSEGSS  660
EQLSAAAIQL DPVISEKPYD PIHDSRELRN SNNPVFLLPN NAENTSVDGK VDKPSNVVSP  720
SSFPSGANGN DYLQAHNSVE PKQKNCQLSQ LEPLAKSEIV KGNSEFGAQE SKNVKEESKS  780
PDIGPLEGTE KDGAEEGKKS KEVKGSRAFK FALVEFVKDL LKPTWKDGQI NKDAYKTIVK  840
KVVDKVTSTM QGANIPQTQE KIDHYLSFSK PKLTKLVQAY VEKMQKG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008231642.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008231642.10.0PREDICTED: zinc finger CCCH domain-containing protein 38
TrEMBLM5W7860.0M5W786_PRUPE; Uncharacterized protein
STRINGXP_008231642.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40993252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.16e-11C3H family protein