PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008231402.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 590aa    MW: 64632.4 Da    PI: 7.4738
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008231402.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.31.6e-33253310260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDg+nWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  XP_008231402.2 253 DDGFNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGNHNHPK 310
                     8****************************************.***************85 PP
2WRKY105.52.8e-33424482159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct +gCpv+k+ver+++d ++v++tYeg+Hnh+
  XP_008231402.2 424 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHD 482
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.0E-28246311IPR003657WRKY domain
SuperFamilySSF1182902.62E-25251311IPR003657WRKY domain
SMARTSM007745.2E-37252310IPR003657WRKY domain
PfamPF031061.2E-25253309IPR003657WRKY domain
PROSITE profilePS5081123.456253311IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-37409484IPR003657WRKY domain
SuperFamilySSF1182903.14E-29416484IPR003657WRKY domain
PROSITE profilePS5081138.377419484IPR003657WRKY domain
SMARTSM007743.1E-39424483IPR003657WRKY domain
PfamPF031069.6E-26425482IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MASSSGSLDT SANSHPTFTF STHPFMTTSF SDLLASGTDE DPSTNTTVQH VGHGGLADRI  60
AERTGSGVPK FKSLPPPSLP ISPPSVSPSS YFAIPAGLSP AELLDSPVLL STSNILPSPT  120
TGSFAAQAFW KANSGNNQQI VKHESKNYSD FSFQTQTRPF TSSSTMFQSS NGTIQTAQKQ  180
GWSNSYFQAQ EPQKQDDFSS GKSMVKPEYG SVQSFSSGMA TNIQNNSQAN GGFQSEYSNY  240
NHQTSQTLSR KSDDGFNWRK YGQKQVKGSE NPRSYYKCTY PNCPTKKKVE RSLDGQITEI  300
VYKGNHNHPK PQNTRRSSSN SSHAIQASNP NTNEIPDQSF ANHGNSQMDS IGTPENSSIS  360
MGDDDFEQSS QKSKSGGGDE FDEDEPNAKR WKKDVDNEGI SAPGSRTVRE PRVVVQTTSD  420
IDILDDGYRW RKYGQKVVKG NPNPRSYYKC TNPGCPVRKH VERASHDLRA VITTYEGKHN  480
HDVPAARGSG SHASVNRALP NNNNINNSNN NVATAMRPVA HQTNNLRQQT SEGQQAPFTL  540
EMLQSPGSFG FAGFDNSMGS YMNQAQLNEN MFSKTKEEPR DDAFFESLLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-38253485878Probable WRKY transcription factor 4
2lex_A7e-38253485878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008231402.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008231402.20.0PREDICTED: probable WRKY transcription factor 33
SwissprotQ6B6R41e-144WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLM5W7170.0M5W717_PRUPE; Uncharacterized protein
STRINGXP_008231402.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-115WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]