PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_008231272.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 413aa MW: 46658.4 Da PI: 6.1576 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.7 | 3.1e-06 | 3 | 26 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ffa G C G+ C F+H+ XP_008231272.1 3 KRVLCKFFAH-GACLKGEHCEFSHD 26 99****6666.*************5 PP | |||||||
2 | zf-CCCH | 22.4 | 2.2e-07 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f+++ G C +G+rC++ H+ XP_008231272.1 34 ICTFYQK-GACAFGSRCRYEHV 54 7******.***********997 PP | |||||||
3 | zf-CCCH | 19.1 | 2.4e-06 | 148 | 170 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa+ G C++G++C+ +Hg XP_008231272.1 148 HAICS-FAAAGNCPRGEKCPHIHG 170 57899.**************9998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.671 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-5 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.58E-7 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF15663 | 1.3E-7 | 7 | 62 | No hit | No description |
PROSITE profile | PS50103 | 14.108 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.3E-4 | 30 | 55 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-5 | 32 | 53 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.784 | 145 | 172 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0035 | 146 | 171 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 2.53E-13 | 204 | 278 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 1.2E-9 | 209 | 274 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
Pfam | PF13639 | 2.2E-7 | 213 | 272 | IPR001841 | Zinc finger, RING-type |
CDD | cd00162 | 7.92E-4 | 213 | 273 | No hit | No description |
PROSITE profile | PS50089 | 12.445 | 214 | 272 | IPR001841 | Zinc finger, RING-type |
SMART | SM00184 | 1.9E-7 | 214 | 271 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 238 | 247 | IPR017907 | Zinc finger, RING-type, conserved site |
SMART | SM00356 | 0.054 | 301 | 329 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.469 | 301 | 330 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 413 aa Download sequence Send to blast |
MSKRVLCKFF AHGACLKGEH CEFSHDWKTT PNNICTFYQK GACAFGSRCR YEHVKASRAQ 60 SSGSSSSTNS RQSLAVDSLS MAHPSRTSSS GVALAPGILS ELSASSCPFL PPSKPAWNGS 120 LDDDDYDDNG DNDDDGAGAT RSTRPEDHAI CSFAAAGNCP RGEKCPHIHG DICPSCGKHC 180 LHPYRPMERE EHMKTCEEKQ KQLEALKCSQ EIECSVCLER VLSKPTVAER KFGILSECDH 240 PFCVSCIRNW RSSSPTSGMD VNSALRACPI CRKLSYFVIP SVIWYNTKEE KQEIIDSYKS 300 RLRSIDCKHF DFGNGNCPFG TSCFYKHTVR PGSYVWKFHR PPPRRPPPRR YDIVPMDVIF 360 HMFEHLEEWD DYILEDLENE DLNPLEREEL LMQMGFDTSD SSEDEIDLWP VSY |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_008231272.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008231272.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 | ||||
Swissprot | E0X9N4 | 1e-147 | C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69 | ||||
TrEMBL | M5XJS3 | 0.0 | M5XJS3_PRUPE; Uncharacterized protein | ||||
STRING | XP_008231272.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10211 | 33 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-133 | C3H family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|